Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13 275 1e-68 seq14 266 6e-66 >seq13 Length=727576108 Score = 275 bits (304), Expect = 1e-68 Identities = 586/865 (68%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 164669602 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 164669661 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| | ||| |||| | | || ||| |||| | ||| Sbjct 164669662 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAG-CCCAGCGCCATGAGC 164669719 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 164669720 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 164669779 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || |||||| |||| || | |||||| || ||| ||| Sbjct 164669780 GCGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATC 164669839 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||||||| | ||| ||| ||| || | ||||| | |||||| Sbjct 164669840 TCGAAGACGCGGGACTCGTCCAGCTTGCCGCGGAGGA---TGTCGTAGAGGAGGCAGGCG 164669896 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 164669897 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 164669956 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| ||| | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 164669957 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 164670016 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315 || || ||||| ||| || | ||||| |||||| | | | | |||||| Sbjct 164670017 TCGACGCAGGCGAAGGCGACGA--TGCGCTCCG--CGAAGCGCTCCCCGCCGTCGATCCA 164670072 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | ||||||||||| ||||| | ||| ||| || || || ||||| |||| Sbjct 164670073 GCGGAGCGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGA 164670128 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| || ||| | ||||| Sbjct 164670129 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 164670185 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| | Sbjct 164670186 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 164670245 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || || || || || | Sbjct 164670246 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 164670305 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| || || ||| | | || Sbjct 164670306 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCC 164670365 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | ||||||||||| || | || | Sbjct 164670366 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCT 164670425 Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690 | ||||| | |||| || | ||| Sbjct 164670426 TCTTGTAGAACTCCCAGATCTGCGG 164670450 >seq14 Length=755408349 Score = 266 bits (294), Expect = 6e-66 Identities = 583/865 (67%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 132512265 CTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 132512324 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| | ||| || | | | || ||| |||| | ||| Sbjct 132512325 CATCCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTG-CAG-CCCAGCGCCATGAGC 132512382 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||| ||| | ||||||||| | ||| Sbjct 132512383 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGC 132512442 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| || | || |||||| |||| || | |||||| || || ||| Sbjct 132512443 GCGCAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATC 132512502 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| ||||| | ||| ||||||| || | ||||| | |||||| Sbjct 132512503 TCGAAGACGCGTGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCG 132512559 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 132512560 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 132512619 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| ||| | || ||||||||||| || || ||| ||||| ||||||||||||||| Sbjct 132512620 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 132512679 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGATCCA 48315 ||||| ||||| ||| || | ||| | |||||| || | | |||||| Sbjct 132512680 TCCACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCACCGTCGATCCA 132512735 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | || |||||||| ||||| | ||| ||| || || || ||||| |||| Sbjct 132512736 GCGCAGGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGTATGGTGTCGATGGCGCGGA 132512791 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | ||||| || ||| | ||||| Sbjct 132512792 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 132512848 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| | Sbjct 132512849 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 132512908 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || || || || || | Sbjct 132512909 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 132512968 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| || || ||| | | || Sbjct 132512969 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTGGTGTCCC 132513028 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | ||||||||||| || | || | Sbjct 132513029 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCT 132513088 Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690 | ||||| | |||| || | ||| Sbjct 132513089 TCTTGTAGAACTCCCAGATCTGCGG 132513113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929796259842560