Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq13 275 1e-68
seq14 266 6e-66
>seq13
Length=727576108
Score = 275 bits (304), Expect = 1e-68
Identities = 586/865 (68%), Gaps = 29/865 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || | ||||| |||||||| ||||| |||| || ||||||| |||
Sbjct 164669602 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 164669661
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956
||| || ||| ||||||| | ||| |||| | | || ||| |||| | |||
Sbjct 164669662 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTG-CAG-CCCAGCGCCATGAGC 164669719
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | || |||||| |||||||||| | ||||||| | ||||||||| | |||
Sbjct 164669720 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 164669779
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
| ||| | || | || |||||| |||| || | |||||| || ||| |||
Sbjct 164669780 GCGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATC 164669839
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| ||||||||||| | ||| ||| ||| || | ||||| | ||||||
Sbjct 164669840 TCGAAGACGCGGGACTCGTCCAGCTTGCCGCGGAGGA---TGTCGTAGAGGAGGCAGGCG 164669896
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||
Sbjct 164669897 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 164669956
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| ||| | || ||||||||||| || || ||| ||||| |||||||||||||||
Sbjct 164669957 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 164670016
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCA 48315
|| || ||||| ||| || | ||||| |||||| | | | | ||||||
Sbjct 164670017 TCGACGCAGGCGAAGGCGACGA--TGCGCTCCG--CGAAGCGCTCCCCGCCGTCGATCCA 164670072
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371
| ||||||||||| ||||| | ||| ||| || || || ||||| ||||
Sbjct 164670073 GCGGAGCGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGATGGCGCGGA 164670128
Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
||| | | ||| ||| | |||| | ||||| || ||| | |||||
Sbjct 164670129 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 164670185
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 164670186 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 164670245
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||||||| || | ||| || || ||||| || || || || || || |
Sbjct 164670246 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 164670305
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605
| |||||||| || || || | ||| |||||||||| || || ||| | | ||
Sbjct 164670306 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCC 164670365
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| | |||| | |||||||| || || | ||||||||||| || | || |
Sbjct 164670366 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCT 164670425
Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690
| ||||| | |||| || | |||
Sbjct 164670426 TCTTGTAGAACTCCCAGATCTGCGG 164670450
>seq14
Length=755408349
Score = 266 bits (294), Expect = 6e-66
Identities = 583/865 (67%), Gaps = 29/865 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || ||||| | ||||| |||||||| ||||| |||| || |||||| |||
Sbjct 132512265 CTGGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 132512324
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956
||| || ||| ||||||| | ||| || | | | || ||| |||| | |||
Sbjct 132512325 CATCCAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTG-CAG-CCCAGCGCCATGAGC 132512382
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | || |||||| |||||||||| | ||| ||| | ||||||||| | |||
Sbjct 132512383 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGC 132512442
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
| ||||| || | || |||||| |||| || | |||||| || || |||
Sbjct 132512443 GCGCAGGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATC 132512502
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| ||||| ||||| | ||| ||||||| || | ||||| | ||||||
Sbjct 132512503 TCGAAGACGCGTGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCG 132512559
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||
Sbjct 132512560 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 132512619
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| ||| | || ||||||||||| || || ||| ||||| |||||||||||||||
Sbjct 132512620 ATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 132512679
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGATCCA 48315
||||| ||||| ||| || | ||| | |||||| || | | ||||||
Sbjct 132512680 TCCACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCACCGTCGATCCA 132512735
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371
| || |||||||| ||||| | ||| ||| || || || ||||| ||||
Sbjct 132512736 GCGCAGGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGTATGGTGTCGATGGCGCGGA 132512791
Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
||| | | ||| ||| | |||| | ||||| || ||| | |||||
Sbjct 132512792 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACA 132512848
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 132512849 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGA 132512908
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||||||| || | ||| || || ||||| || || || || || || |
Sbjct 132512909 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 132512968
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605
| |||||||| || || || | ||| |||||||||| || || ||| | | ||
Sbjct 132512969 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTGGTGTCCC 132513028
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| | |||| | |||||||| || || | ||||||||||| || | || |
Sbjct 132513029 AGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCT 132513088
Query 48666 TTTTGTACATGCCCCATATGTCCGG 48690
| ||||| | |||| || | |||
Sbjct 132513089 TCTTGTAGAACTCCCAGATCTGCGG 132513113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929796259842560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |