Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 235 1e-56 seq13 217 3e-51 >seq14 Length=755408349 Score = 235 bits (260), Expect = 1e-56 Identities = 570/855 (67%), Gaps = 23/855 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||||||||| ||| | || || Sbjct 132513107 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 132513048 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 132513047 TCCTCCGACGCGCGCCACTGGGACACCACGCTCTCCAACGACGAGCGCCACTTCATCTCC 132512988 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 132512987 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 132512928 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 132512927 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 132512868 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 132512867 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 132512808 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||||||| | | | ||||| Sbjct 132512807 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATACCCGCCGTGCGCCGCAAGGCCGAC 132512748 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || |||||| || | | |||||| || |||||| | || ||||| Sbjct 132512747 TGGGCCCTGCGCTGGATCGACGGTGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 132512692 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| |||||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 132512691 CGCCTGC-GTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 132512634 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 132512633 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 132512574 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | ||| | | || || | | Sbjct 132512573 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 132512518 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | || ||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct 132512517 GTCACGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 132512458 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| | || |||||||| ||||| |||| Sbjct 132512457 CGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTT 132512398 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246 || ||||||| ||||| || | |||||| || || ||| ||| | |||| | || Sbjct 132512397 CGTCGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTATACAACGCCACCAA 132512341 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||||||||||| ||||| ||| || || | || |||||||||||||| || ||| | Sbjct 132512340 CCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCG 132512281 Query 26307 GGTCGGCGACTATCA 26321 || ||||| || || Sbjct 132512280 CGTGGGCGAGTACCA 132512266 >seq13 Length=727576108 Score = 217 bits (240), Expect = 3e-51 Identities = 569/859 (66%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||||||||| ||| | || || Sbjct 164670444 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 164670385 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 164670384 TCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCC 164670325 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 164670324 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 164670265 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 164670264 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 164670205 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 164670204 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 164670145 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 164670144 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 164670085 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | |||||| || || | |||||| || ||||| | || ||||| Sbjct 164670084 TGGGCGCTCCGCTGGATCGACGGCGGGGAGCGCTTCGCG----GAGCGCATCGTCGCCTT 164670029 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 164670028 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 164669971 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 164669970 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 164669911 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC--AAACCTTCTC 26068 || ||| | || || |||||||| ||||| | || | |||| | || || | Sbjct 164669910 CTGCACTGCGACTTCGCCTGCCTCCTCTA------CGACATCCTCCGCGGCAAGCTGGAC 164669857 Query 26069 AAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || | ||||| | ||| | ||||| ||||| ||||||| |||||| Sbjct 164669856 GAGTCCCGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGC 164669797 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | ||||||||||| ||||| ||| Sbjct 164669796 GACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAG 164669737 Query 26188 TATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC-- 26242 | || ||||||| ||||| || | |||||| || || ||| || |||| |||| Sbjct 164669736 TTCGTCGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCA 164669682 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || | Sbjct 164669681 CCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 164669622 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | |||||||| || || Sbjct 164669621 AGCGCGTCGGCGAGTACCA 164669603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927113270744960