Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq14 235 1e-56
seq13 217 3e-51
>seq14
Length=755408349
Score = 235 bits (260), Expect = 1e-56
Identities = 570/855 (67%), Gaps = 23/855 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| ||| |||||||||||| ||| | || ||
Sbjct 132513107 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 132513048
Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| ||| | | |||| || | || ||||| ||||||| || || ||
Sbjct 132513047 TCCTCCGACGCGCGCCACTGGGACACCACGCTCTCCAACGACGAGCGCCACTTCATCTCC 132512988
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
||||| | || ||||| || ||||| || || || ||| |||||| || | ||
Sbjct 132512987 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 132512928
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| || |||||| || ||||||| | |||||||| |||||||| ||||||
Sbjct 132512927 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 132512868
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| || ||| | ||| ||||| |||| || |
Sbjct 132512867 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 132512808
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|||| || || || || | |||||||| ||||||| | | | |||||
Sbjct 132512807 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATACCCGCCGTGCGCCGCAAGGCCGAC 132512748
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||| || |||||| || | | |||||| || |||||| | || |||||
Sbjct 132512747 TGGGCCCTGCGCTGGATCGACGGTGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 132512692
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| |||||||||||||| ||| || || || |||| |||||||||||||||||
Sbjct 132512691 CGCCTGC-GTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 132512634
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| ||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 132512633 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 132512574
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070
|| ||| | || || |||||||| |||||| | | | ||| | | || || | |
Sbjct 132512573 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 132512518
Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
| || ||||| | ||| || ||||| ||||| ||||||| ||||||
Sbjct 132512517 GTCACGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 132512458
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
| ||||||||| | || |||||||| ||||| ||||
Sbjct 132512457 CGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTT 132512398
Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246
|| ||||||| ||||| || | |||||| || || ||| ||| | |||| | ||
Sbjct 132512397 CGTCGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTATACAACGCCACCAA 132512341
Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306
||||||||||| ||||| ||| || || | || |||||||||||||| || ||| |
Sbjct 132512340 CCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCG 132512281
Query 26307 GGTCGGCGACTATCA 26321
|| ||||| || ||
Sbjct 132512280 CGTGGGCGAGTACCA 132512266
>seq13
Length=727576108
Score = 217 bits (240), Expect = 3e-51
Identities = 569/859 (66%), Gaps = 31/859 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| ||| |||||||||||| ||| | || ||
Sbjct 164670444 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 164670385
Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| ||| | | |||| || | || ||||| ||||||| || || ||
Sbjct 164670384 TCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCC 164670325
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
||||| | || ||||| || ||||| || || || ||| |||||| || | ||
Sbjct 164670324 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 164670265
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| || |||||| || ||||||| | |||||||| |||||||| ||||||
Sbjct 164670264 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 164670205
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| || ||| | ||| ||||| |||| || |
Sbjct 164670204 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 164670145
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
|||| || || || || | |||||||| ||| ||| | | | |||||
Sbjct 164670144 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAC 164670085
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
||||| | |||||| || || | |||||| || ||||| | || |||||
Sbjct 164670084 TGGGCGCTCCGCTGGATCGACGGCGGGGAGCGCTTCGCG----GAGCGCATCGTCGCCTT 164670029
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| || ||||||||||| ||| || || || |||| |||||||||||||||||
Sbjct 164670028 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 164669971
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| ||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 164669970 AAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 164669911
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC--AAACCTTCTC 26068
|| ||| | || || |||||||| ||||| | || | |||| | || || |
Sbjct 164669910 CTGCACTGCGACTTCGCCTGCCTCCTCTA------CGACATCCTCCGCGGCAAGCTGGAC 164669857
Query 26069 AAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127
|| | ||||| | ||| | ||||| ||||| ||||||| ||||||
Sbjct 164669856 GAGTCCCGCGTCTTCGAGATCGTGTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGC 164669797
Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187
| ||||||||| | ||||||||||| ||||| |||
Sbjct 164669796 GACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAG 164669737
Query 26188 TATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC-- 26242
| || ||||||| ||||| || | |||||| || || ||| || |||| ||||
Sbjct 164669736 TTCGTCGCCGACCGCCTGCTCATGGC-GCTGGG-CT-GCAAGAAGCTGTACA--ACGCCA 164669682
Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302
| ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || |
Sbjct 164669681 CCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 164669622
Query 26303 AGAGGGTCGGCGACTATCA 26321
|| | |||||||| || ||
Sbjct 164669621 AGCGCGTCGGCGAGTACCA 164669603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927113270744960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |