Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq129631 123 6e-24 >seq129631 Length=630463 Score = 123 bits (136), Expect = 6e-24 Identities = 229/336 (68%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 4182 CATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATCCTGTCCGCT 4241 ||||||||| || || |||| | || || | ||| || || | | || | || | Sbjct 140987 CATTTGCATCGTACCGCCAATGTTAACTATAATTTCTGTTGTATAACGTTCAAGACCATT 140928 Query 4242 TTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCCTTTTCG 4301 ||| || ||||||||||| || | | |||||||| ||| || | ||| ||||||| Sbjct 140927 TTGGTCTTGCCATTTTCTAGTTTGAAGGGATCCTTCAATATATACTTGAGAACCTTTTCT 140868 Query 4302 CAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGT 4361 || |||||| | |||||||| |||| ||| || | ||| | | ||||| || || Sbjct 140867 CAAATATTCTCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTATGCCATTCTGT 140808 Query 4362 CTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACTGTAAG 4421 | ||| || | || ||||| | ||||| ||| | ||||| || |||| ||| | Sbjct 140807 TTTCTCTTTATTTTCACCAGTATTTTTATCTTTCCAGTTCTCTGAAGTTGCAAGTGTCAT 140748 Query 4422 GTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCAAGGCGACC 4481 ||| | | ||| | || ||| ||| | | ||| ||||| || || | | |||| Sbjct 140747 ATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGGCCTAAGTGACC 140688 Query 4482 AATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 ||| | ||| || |||||||| ||||| |||||||| Sbjct 140687 AATTAAGATTACTTTATTTACACCTCTACTTGCCAT 140652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126521137820064