Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq129631 172 6e-38 seq146710 84.2 2e-11 >seq129631 Length=630463 Score = 172 bits (190), Expect = 6e-38 Identities = 309/450 (69%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 138485 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACC 138544 ||||| | ||| | ||| || ||||||| | |||||| | | |||||||| | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 138545 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138604 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 138605 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138664 ||| || || || || | || |||||| || ||||| ||||| || || | || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 138665 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTC 138724 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 138725 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 138784 || ||||| |||| ||||||| || ||||| || |||| || | ||||| ||||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 138785 TGAAGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGC---TTCAATAACAACGCA 138841 || | || | ||| ||||| |||| ||| | |||| |||||| | || || Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACACACA 522269 Query 138842 TGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAAT 138901 |||||||| || |||||||| || | || | |||||| || || || || || || Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATAT 522209 Query 138902 CTGTCGAGTAGATACTGCTTCATAAAAACG 138931 | ||| || | ||| | |||||| || Sbjct 522208 TTTAAAAGTGGAAATTGCATTATAAAAGCG 522179 >seq146710 Length=16940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 69651 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69709 |||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672 Query 69710 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 69739 | ||||||| ||||| ||| ||||||| Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531675812139760