Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq129631 120 3e-22 >seq129631 Length=630463 Score = 120 bits (132), Expect = 3e-22 Identities = 305/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 146563 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 146622 |||||||| ||| ||||||| || || || | | ||||| |||| ||| |||| || Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556 Query 146623 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCA 146682 || | || | | ||||| | ||| |||||||| || || ||| | | ||| || || Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496 Query 146683 CCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 146741 || || | || || ||||||||||||||||| || | ||| | ||| ||| | || Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTTTATAAAA 522437 Query 146742 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 146801 |||||| || |||||| |||| ||| | || | ||| ||| ||| Sbjct 522436 AGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA-- 522379 Query 146802 CATT---CCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTT 146858 ||| ||||| |||| || || || || |||| | |||||| | ||||| | Sbjct 522378 -ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACT 522320 Query 146859 GTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAA 146918 || || |||||| || | | |||| ||| |||||| | || |||||||| || Sbjct 522319 AGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAA 522260 Query 146919 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 146978 || ||||| || || | ||| || | |||||| || || || ||||| || | | | Sbjct 522259 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 522200 Query 146979 AGATACGGCATTATAGAAACGGATAATATGCTTAAGACGA 147018 || | |||||||| || || ||||| || | |||| Sbjct 522199 GGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 522160 Score = 107 bits (118), Expect = 2e-18 Identities = 81/93 (87%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 74897 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 74956 || ||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 130068 TATTTTAATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 130127 Query 74957 TAACCATCTGAGCTAAAGGGCC-TTTGTTTATG 74988 | |||| ||||||||||||||| | | |||||| Sbjct 130128 TGACCA-CTGAGCTAAAGGGCCATATATTTATG 130159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539054032158160