Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 2e-13 seq2 89.7 8e-13 seq7 87.8 3e-12 seq121921 86.0 1e-11 seq41914 86.0 1e-11 seq12 86.0 1e-11 seq11 86.0 1e-11 seq5 86.0 1e-11 >seq13 Length=727576108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct 630062560 GGATTGTAGTTCAATTGGTC-AGAGTACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 630062618 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 630062619 CCCCGTCAGTCC 630062630 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 436694384 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 436694442 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 436694443 CCCCGTCAGTCC 436694454 >seq2 Length=690537804 Score = 89.7 bits (98), Expect = 8e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 16849896 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 16849838 Query 169788 CCCCGTCAGTCCTG 169801 |||||||||||||| Sbjct 16849837 CCCCGTCAGTCCTG 16849824 >seq7 Length=726427787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 169727 AGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGA 169786 |||||||||| ||| ||||| ||||| ||||||||||| |||||| | |||||||||| Sbjct 324833501 AGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGA 324833443 Query 169787 GCCCCGTCAGTCC 169799 ||||||||||||| Sbjct 324833442 GCCCCGTCAGTCC 324833430 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 657754242 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 657754184 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 657754183 CCCCGTCAGTCC 657754172 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||| ||||| |||||| | ||||||||||| Sbjct 536844556 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCTTGTCAAGGCGGAAGCTGCGGGTTCGAG 536844614 Query 169788 CCCCGTCAGTCC---TGCCATTTTTAAATTGCG 169817 |||||||||||| ||||| ||| |||||| Sbjct 536844615 CCCCGTCAGTCCCGGAGCCATATTT--ATTGCG 536844645 >seq121921 Length=1231 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 7 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 65 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 66 CCCCGTCAGTCC 77 >seq41914 Length=1043 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 210 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 152 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 151 CCCCGTCAGTCC 140 >seq12 Length=703217322 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 608526281 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 608526339 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 608526340 CCCCGTCAGTCC 608526351 >seq11 Length=621432051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 95815964 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 95816022 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 95816023 CCCCGTCAGTCC 95816034 >seq5 Length=754274518 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 603555171 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 603555229 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 603555230 CCCCGTCAGTCC 603555241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776182357866400