Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_019929.1
Length=243050
Score E
Sequences producing significant alignments: (Bits) Value
seq13 91.5 2e-13
seq2 89.7 8e-13
seq7 87.8 3e-12
seq121921 86.0 1e-11
seq41914 86.0 1e-11
seq12 86.0 1e-11
seq11 86.0 1e-11
seq5 86.0 1e-11
>seq13
Length=727576108
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/72 (89%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| ||||| ||||||||||| |||||| | |||||||||||
Sbjct 630062560 GGATTGTAGTTCAATTGGTC-AGAGTACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 630062618
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 630062619 CCCCGTCAGTCC 630062630
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 436694384 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 436694442
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 436694443 CCCCGTCAGTCC 436694454
>seq2
Length=690537804
Score = 89.7 bits (98), Expect = 8e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 16849896 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 16849838
Query 169788 CCCCGTCAGTCCTG 169801
||||||||||||||
Sbjct 16849837 CCCCGTCAGTCCTG 16849824
>seq7
Length=726427787
Score = 87.8 bits (96), Expect = 3e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 169727 AGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGA 169786
|||||||||| ||| ||||| ||||| ||||||||||| |||||| | ||||||||||
Sbjct 324833501 AGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGA 324833443
Query 169787 GCCCCGTCAGTCC 169799
|||||||||||||
Sbjct 324833442 GCCCCGTCAGTCC 324833430
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 657754242 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 657754184
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 657754183 CCCCGTCAGTCC 657754172
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/93 (82%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||| ||||| |||||| | |||||||||||
Sbjct 536844556 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCTTGTCAAGGCGGAAGCTGCGGGTTCGAG 536844614
Query 169788 CCCCGTCAGTCC---TGCCATTTTTAAATTGCG 169817
|||||||||||| ||||| ||| ||||||
Sbjct 536844615 CCCCGTCAGTCCCGGAGCCATATTT--ATTGCG 536844645
>seq121921
Length=1231
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 7 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 65
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 66 CCCCGTCAGTCC 77
>seq41914
Length=1043
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 210 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 152
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 151 CCCCGTCAGTCC 140
>seq12
Length=703217322
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 608526281 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 608526339
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 608526340 CCCCGTCAGTCC 608526351
>seq11
Length=621432051
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 95815964 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 95816022
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 95816023 CCCCGTCAGTCC 95816034
>seq5
Length=754274518
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 603555171 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 603555229
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 603555230 CCCCGTCAGTCC 603555241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 776182357866400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |