Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 4e-14 seq12 87.8 2e-12 seq11 87.8 2e-12 >seq14 Length=755408349 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| ||| || |||| Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || |||| || ||| ||||||||||| | ||| ||| || Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| ||||| ||| | || ||| ||| | || ||||| ||| Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 638076816 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||||||||| |||| Sbjct 638076817 ATCCAAAAAGAATCCACTCTGCACTTGGT 638076845 >seq12 Length=703217322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || || |||||||| || ||| || Sbjct 511296485 ATGCAGATTTTTGTCAAGACGTTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 511296426 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| ||| ||||| |||||| | || ||||| Sbjct 511296425 GACACCATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 511296366 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||| ||| || |||| ||||||||| Sbjct 511296365 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 511296306 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 511296305 ATCCAAAAAGAATCCACTCTTCA 511296283 >seq11 Length=621432051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 || || || ||||| || |||||||| || || ||||| || || ||| || Sbjct 492790493 ATACAGATTTTTGTCAAGACATTAACTGGAAAGACCATCACTCTTGAGGTGGAGAGCTCC 492790434 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | || |||||| Sbjct 492790433 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 492790374 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || ||| |||| ||| || |||| ||||||||| Sbjct 492790373 CAGAGGCTTATCTTTGCAGGGAAGCAACTGGAGGATGGGCGTACCTTGGCAGATTATAAC 492790314 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 492790313 ATCCAAAAAGAATCCACTCTTCA 492790291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424631596731786