Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq129631 194 2e-44 >seq129631 Length=630463 Score = 194 bits (214), Expect = 2e-44 Identities = 929/1462 (64%), Gaps = 60/1462 (4%) Strand=Plus/Plus Query 119736 GGAGATATATTTGAAACACCACAATTCATGTATATGTTAATCTCTGCTACATTATTCAGA 119795 ||||| |||| ||||| ||||||| | ||||| ||||| ||||| ||||| Sbjct 522083 GGAGAAATATATGAAAGTGCACAATTTTTATATATTTTAATATCTGCATGCTTATTTTCT 522142 Query 119796 AATTACTCAAAAGAAAAAAGGATGAGTTATGTTAAAAAATATTATAACGCAATATCAACC 119855 || ||| |||| | | | |||| |||| || | | |||||| ||||| || Sbjct 522143 AAATACGAAAAAAATATTCGTATGAATTATATTCAGCGCTTTTATAATGCAATTTC---- 522198 Query 119856 CACCTTATCAACATTCCTACTC----CGGTCATGGCAGGTGTTAGGACTCCTATTCGCCA 119911 ||| || || || |||| | || | ||| |||| || || || || | ||| || Sbjct 522199 CACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCA 522258 Query 119912 GTATGCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTAC---CTAGTATCTTCTCTAG 119968 | | | |||||| | | || || |||| |||| ||| || | || | Sbjct 522259 ATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAACTCTATTAA-TGCTACAA 522317 Query 119969 CGATATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGGTATCAATGCTGGCAG 120028 | || || |||| ||||||| ||||| | || || || || || || ||||| Sbjct 522318 C--TAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCA 522375 Query 120029 AATTAGGGGAATTAATAGTCGTATCCGTGGCGGAGAAGTTCAACATACCGGCGTTGTCCC 120088 |||| | | | |||| |||| | ||||||| |||||||| | | || Sbjct 522376 AATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCC 522435 Query 120089 ATTTCTTAAAAAGTTTGAGGCAACGGTCAAGTGTTGTACACAAAACGGTGTTAGAGGCGG 120148 ||| |||| | || | | || || | |||| | ||| || |||||||| || Sbjct 522436 TTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGG 522495 Query 120149 TTCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAGATATACTTGTTTTAAA 120208 | |||||||| | || || ||||| | |||||| ||| || || | |||||||| Sbjct 522496 GGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAA 522555 Query 120209 AAACAATAAAGGTACGGAAGATAATAGAGTTAGAAAATTAGATTACTCTATACAATTATC 120268 ||| |||| ||| | ||||| |||||||| | | | ||||| || ||||| | Sbjct 522556 AAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAA 522615 Query 120269 AAAATTATTTTACGAAAGATT--TATTAAGAATGAAGATATAACTTTATTCTCTCCACAT 120326 |||||| | || ||||| | || || ||| || | || || ||||| ||| | Sbjct 522616 TAAATTAATGTATCAAAGAATGCTACTAGGAA--AAAAAATTACATTATTTAGTCCTTCT 522673 Query 120327 GATGTGCCAGGTTTATATGACGCATTT------GGTAAGGAAGAGTTTGACGAATTGTAT 120380 || || || |||||| | ||| | | | || | ||| | ||| | ||| Sbjct 522674 GACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAAAAAAAATTTAAGGAAATTTAT 522733 Query 120381 GCTTCGTATGAAAGAAAAACATCTATA-AAGAAAAAGAAAGTC--AACGCACAAGATTTG 120437 | ||||||| |||| | | ||| |||||||| ||||| || ||| |||||| Sbjct 522734 ATTAAATATGAAA--AAAATAGCAATATAAGAAAAA-AAAGTATTAATGCAATTGATTTG 522790 Query 120438 TTTATGTCAATCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTATATTATGAACATTGAC 120497 || | ||| | |||||||||| ||| || ||||||||||| || | || Sbjct 522791 TTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGTATCTATATACAAAATGTAGAT 522850 Query 120498 CATGTTAATACTCATTCATCTTTTAAAGATAAAGTA-----AACATG----TCTAATCTA 120548 ||| |||| | ||| | ||||| |||| | || | | ||||| | Sbjct 522851 CATTGTAATTCACATAGTCCATTTAATTCTAAATTGGCAACAATAAGACAATCTAACTTG 522910 Query 120549 TGCCAAGAGATTACATTACCAACAGAACCTATTAGTCACATTGACGGTGAA---GGTGAG 120605 || ||| |||||||| || ||| |||| | | | | ||||| | | || || || Sbjct 522911 TGTTTAGAAATTACATTGCCTACAAAACCACTAAATAATATTGATGATAAAAATGGAGAA 522970 Query 120606 ATTGCATTGTGTATTCTATCTGCTATCAATATGGGTGCAATTAATGATAAAGAAGAATTA 120665 |||||| | |||| |||||| ||| ||||| | ||| ||||||| || | | || | Sbjct 522971 ATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGTTTAATTAATAATTTAAATGATCTC 523030 Query 120666 GAAAACCTTTGTGATTTATCTGTAAGAGGACTAGAAGAAATAATTGACCATCAAAATTAT 120725 | | | | | |||||||| | | |||| |||||| | || ||||||| ||| Sbjct 523031 AAGGAATTATCTATACTATCTGTACGCGCTTTAGATGAAATATTAGAATATCAAAACTAT 523090 Query 120726 CCTGTTATAGCGGCAGAAAAAAGTACAAAAGCAAGGCGTTCACTAGGTATTGGTTATATT 120785 || || || ||| ||||| | | |||| ||||| |||| |||||| ||| Sbjct 523091 CCAGTATTATGTGCAAAAAAATCTGCTGTTTCAAGACGTTCTTTAGGAATTGGTGTAATT 523150 Query 120786 GGTCTTGCTCATTTCTTAGCAAAGAACAAGGTTTCTTACGCCTCAAAAGAAGCC--TGGA 120843 | |||| ||| ||||| || ||||| || |||| | ||| | | || | Sbjct 523151 AATTTTGCATATTATTTAGCTAAAAACAAAGT-----ACGC-TATTCAGATGGCAGTGCA 523204 Query 120844 AGTTGGTGGACG------AGTTTACTGAGGCATTTCAATACTATCTACTCAAAGCTTCCA 120897 | | ||| | ||| ||| ||| | || || ||| |||| ||||||||| Sbjct 523205 AAAAATTTAACGCATAAAACTTT--TGAAGCAATACAGTATTATTTACTAAAAGCTTCCT 523262 Query 120898 ATGAGATTGCAAAAGAAAAAGGACCATGTGAATACTTTAGTAGAACAAAATACTCAGATG 120957 ||| | || |||||||||||| | ||| || |||| | ||| || || | | Sbjct 523263 GTGAATTAGCCAAAGAAAAAGGATCTTGTTTATTATTTAATCAAACTAATTATTATTTAG 523322 Query 120958 GTATATTACCAATTGACACTTATAAAAAAGATGTTGATAATATAGTTAAAAGAAAACTAT 121017 ||| | |||||||| || |||||||||||||| ||| ||| ||| | | || Sbjct 523323 GTAAGCTTCCAATTGATACATATAAAAAAGATGTAGATTCGATATGTAATGAACCATTAC 523382 Query 121018 CTTACAATTGGGAAAAGTTAAGAAAAGAAATACAAGAACATGGTTTAAGACATAGTACAT 121077 || |||||| | ||| ||||| |||| || || |||| |||||| || || | Sbjct 523383 ATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGAAATTCCACTT 523442 Query 121078 TGTCAGCACAAATGCCAAGTGAAAGTTCAAGTGTTGTATCAAATGAAACAAATGGTATTG 121137 | || || |||||| |||| ||| | |||| |||| || |||||||||| Sbjct 523443 TATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACTAATGGTATTG 523502 Query 121138 AACCACCAAGAGATTACTTGTC 121159 |||| ||||||| || ||||| Sbjct 523503 AACCTCCAAGAGGTT--TTGTC 523522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 122867 TTGTTTTGGCGACCAGAAGAAATATCTTTACAAAAAGATAGAAACGATTGGCAACAATTA 122926 || |||||| |||||||||||||| |||| |||||||||| |||| ||| | ||| Sbjct 524317 TTTTTTTGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTA 524376 Query 122927 CGACCAGAACAAAAACATATCTTTACATCTAATCTAAGATATCAAACATTATTAGATAGT 122986 | | | |||||||||| |||| | |||| ||| ||||||||| ||| | ||| | Sbjct 524377 CCTTCTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCT 524436 Query 122987 GTACAAGGTAGAGGACCTAGTTTATCTTTCTTACC 123021 | ||||| ||| | |||| | |||| ||||| Sbjct 524437 ATTCAAGGAAGAAGTCCTAACATCGCTTTTTTACC 524471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470302436532160