Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_020484.1
Length=147284
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 194 2e-44
>seq129631
Length=630463
Score = 194 bits (214), Expect = 2e-44
Identities = 929/1462 (64%), Gaps = 60/1462 (4%)
Strand=Plus/Plus
Query 119736 GGAGATATATTTGAAACACCACAATTCATGTATATGTTAATCTCTGCTACATTATTCAGA 119795
||||| |||| ||||| ||||||| | ||||| ||||| ||||| |||||
Sbjct 522083 GGAGAAATATATGAAAGTGCACAATTTTTATATATTTTAATATCTGCATGCTTATTTTCT 522142
Query 119796 AATTACTCAAAAGAAAAAAGGATGAGTTATGTTAAAAAATATTATAACGCAATATCAACC 119855
|| ||| |||| | | | |||| |||| || | | |||||| ||||| ||
Sbjct 522143 AAATACGAAAAAAATATTCGTATGAATTATATTCAGCGCTTTTATAATGCAATTTC---- 522198
Query 119856 CACCTTATCAACATTCCTACTC----CGGTCATGGCAGGTGTTAGGACTCCTATTCGCCA 119911
||| || || || |||| | || | ||| |||| || || || || | ||| ||
Sbjct 522199 CACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCA 522258
Query 119912 GTATGCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTAC---CTAGTATCTTCTCTAG 119968
| | | |||||| | | || || |||| |||| ||| || | || |
Sbjct 522259 ATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAACTCTATTAA-TGCTACAA 522317
Query 119969 CGATATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGGTATCAATGCTGGCAG 120028
| || || |||| ||||||| ||||| | || || || || || || |||||
Sbjct 522318 C--TAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCA 522375
Query 120029 AATTAGGGGAATTAATAGTCGTATCCGTGGCGGAGAAGTTCAACATACCGGCGTTGTCCC 120088
|||| | | | |||| |||| | ||||||| |||||||| | | ||
Sbjct 522376 AATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCC 522435
Query 120089 ATTTCTTAAAAAGTTTGAGGCAACGGTCAAGTGTTGTACACAAAACGGTGTTAGAGGCGG 120148
||| |||| | || | | || || | |||| | ||| || |||||||| ||
Sbjct 522436 TTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGG 522495
Query 120149 TTCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAGATATACTTGTTTTAAA 120208
| |||||||| | || || ||||| | |||||| ||| || || | ||||||||
Sbjct 522496 GGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAA 522555
Query 120209 AAACAATAAAGGTACGGAAGATAATAGAGTTAGAAAATTAGATTACTCTATACAATTATC 120268
||| |||| ||| | ||||| |||||||| | | | ||||| || ||||| |
Sbjct 522556 AAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAA 522615
Query 120269 AAAATTATTTTACGAAAGATT--TATTAAGAATGAAGATATAACTTTATTCTCTCCACAT 120326
|||||| | || ||||| | || || ||| || | || || ||||| ||| |
Sbjct 522616 TAAATTAATGTATCAAAGAATGCTACTAGGAA--AAAAAATTACATTATTTAGTCCTTCT 522673
Query 120327 GATGTGCCAGGTTTATATGACGCATTT------GGTAAGGAAGAGTTTGACGAATTGTAT 120380
|| || || |||||| | ||| | | | || | ||| | ||| | |||
Sbjct 522674 GACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAAAAAAAATTTAAGGAAATTTAT 522733
Query 120381 GCTTCGTATGAAAGAAAAACATCTATA-AAGAAAAAGAAAGTC--AACGCACAAGATTTG 120437
| ||||||| |||| | | ||| |||||||| ||||| || ||| ||||||
Sbjct 522734 ATTAAATATGAAA--AAAATAGCAATATAAGAAAAA-AAAGTATTAATGCAATTGATTTG 522790
Query 120438 TTTATGTCAATCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTATATTATGAACATTGAC 120497
|| | ||| | |||||||||| ||| || ||||||||||| || | ||
Sbjct 522791 TTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGTATCTATATACAAAATGTAGAT 522850
Query 120498 CATGTTAATACTCATTCATCTTTTAAAGATAAAGTA-----AACATG----TCTAATCTA 120548
||| |||| | ||| | ||||| |||| | || | | ||||| |
Sbjct 522851 CATTGTAATTCACATAGTCCATTTAATTCTAAATTGGCAACAATAAGACAATCTAACTTG 522910
Query 120549 TGCCAAGAGATTACATTACCAACAGAACCTATTAGTCACATTGACGGTGAA---GGTGAG 120605
|| ||| |||||||| || ||| |||| | | | | ||||| | | || || ||
Sbjct 522911 TGTTTAGAAATTACATTGCCTACAAAACCACTAAATAATATTGATGATAAAAATGGAGAA 522970
Query 120606 ATTGCATTGTGTATTCTATCTGCTATCAATATGGGTGCAATTAATGATAAAGAAGAATTA 120665
|||||| | |||| |||||| ||| ||||| | ||| ||||||| || | | || |
Sbjct 522971 ATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGTTTAATTAATAATTTAAATGATCTC 523030
Query 120666 GAAAACCTTTGTGATTTATCTGTAAGAGGACTAGAAGAAATAATTGACCATCAAAATTAT 120725
| | | | | |||||||| | | |||| |||||| | || ||||||| |||
Sbjct 523031 AAGGAATTATCTATACTATCTGTACGCGCTTTAGATGAAATATTAGAATATCAAAACTAT 523090
Query 120726 CCTGTTATAGCGGCAGAAAAAAGTACAAAAGCAAGGCGTTCACTAGGTATTGGTTATATT 120785
|| || || ||| ||||| | | |||| ||||| |||| |||||| |||
Sbjct 523091 CCAGTATTATGTGCAAAAAAATCTGCTGTTTCAAGACGTTCTTTAGGAATTGGTGTAATT 523150
Query 120786 GGTCTTGCTCATTTCTTAGCAAAGAACAAGGTTTCTTACGCCTCAAAAGAAGCC--TGGA 120843
| |||| ||| ||||| || ||||| || |||| | ||| | | || |
Sbjct 523151 AATTTTGCATATTATTTAGCTAAAAACAAAGT-----ACGC-TATTCAGATGGCAGTGCA 523204
Query 120844 AGTTGGTGGACG------AGTTTACTGAGGCATTTCAATACTATCTACTCAAAGCTTCCA 120897
| | ||| | ||| ||| ||| | || || ||| |||| |||||||||
Sbjct 523205 AAAAATTTAACGCATAAAACTTT--TGAAGCAATACAGTATTATTTACTAAAAGCTTCCT 523262
Query 120898 ATGAGATTGCAAAAGAAAAAGGACCATGTGAATACTTTAGTAGAACAAAATACTCAGATG 120957
||| | || |||||||||||| | ||| || |||| | ||| || || | |
Sbjct 523263 GTGAATTAGCCAAAGAAAAAGGATCTTGTTTATTATTTAATCAAACTAATTATTATTTAG 523322
Query 120958 GTATATTACCAATTGACACTTATAAAAAAGATGTTGATAATATAGTTAAAAGAAAACTAT 121017
||| | |||||||| || |||||||||||||| ||| ||| ||| | | ||
Sbjct 523323 GTAAGCTTCCAATTGATACATATAAAAAAGATGTAGATTCGATATGTAATGAACCATTAC 523382
Query 121018 CTTACAATTGGGAAAAGTTAAGAAAAGAAATACAAGAACATGGTTTAAGACATAGTACAT 121077
|| |||||| | ||| ||||| |||| || || |||| |||||| || || |
Sbjct 523383 ATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGAAATTCCACTT 523442
Query 121078 TGTCAGCACAAATGCCAAGTGAAAGTTCAAGTGTTGTATCAAATGAAACAAATGGTATTG 121137
| || || |||||| |||| ||| | |||| |||| || ||||||||||
Sbjct 523443 TATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACTAATGGTATTG 523502
Query 121138 AACCACCAAGAGATTACTTGTC 121159
|||| ||||||| || |||||
Sbjct 523503 AACCTCCAAGAGGTT--TTGTC 523522
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 122867 TTGTTTTGGCGACCAGAAGAAATATCTTTACAAAAAGATAGAAACGATTGGCAACAATTA 122926
|| |||||| |||||||||||||| |||| |||||||||| |||| ||| | |||
Sbjct 524317 TTTTTTTGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTA 524376
Query 122927 CGACCAGAACAAAAACATATCTTTACATCTAATCTAAGATATCAAACATTATTAGATAGT 122986
| | | |||||||||| |||| | |||| ||| ||||||||| ||| | ||| |
Sbjct 524377 CCTTCTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCT 524436
Query 122987 GTACAAGGTAGAGGACCTAGTTTATCTTTCTTACC 123021
| ||||| ||| | |||| | |||| |||||
Sbjct 524437 ATTCAAGGAAGAAGTCCTAACATCGCTTTTTTACC 524471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 470302436532160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |