Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14 118 1e-21 seq13 111 2e-19 seq7 89.7 6e-13 seq11 82.4 9e-11 >seq14 Length=755408349 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||| | | || || || || |||||||| ||||||||||| || || || Sbjct 132512715 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTT 132512656 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 132512655 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 132512596 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 132512595 GCTCATCTCCCGCGACGAGGGCCTGCAC 132512568 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 75188 |||||| ||||| || ||||| ||| |||| || || |||| | ||| || | || Sbjct 35288122 GGGACTTTGATTATGACTACTTCGGTTTCAAGACTCTGGAGAGGTCCTACCTCCTGAAGC 35288063 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 | | ||| | || |||||| || ||| ||||||| ||| |||| || | || || | Sbjct 35288062 TTGGTGGGGTTGTCGTGGAAAGGCCGCAGCACATGTTAATGAGGGTTTCAGTAGGGATAC 35288003 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| ||||||||||||| | | || ||| | ||||||||| | ||| | Sbjct 35288002 ACAAGGATGACATTGATTCTGCCATCAGAACTTACCATCTCATGTCCCAACGCTGGTTTA 35287943 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| || | |||||||| ||||||||||| || || || || ||| Sbjct 35287942 CTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCGAGGCCACAG 35287896 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 646003988 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 646004047 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 646004048 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 646004107 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| || Sbjct 646004108 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTT 646004161 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||| ||||| | |||||||| | ||| |||| ||||| || Sbjct 646004162 CTGACTGAGATGGATGGTTTTGAGGGCAACACTGGCATCATTGTTGTTGCTGCCACCAAC 646004221 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || ||| | ||| ||| | ||| | || || || ||||| Sbjct 646004222 AGGGCTGACATCTTGGATTCCGCTTTGCTTAGACCTGGACGCTTTGA 646004268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 239/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | |||||||| |||||| | ||||| | || | || |||||||||||| Sbjct 733681758 GAGGTGGTGGATTTCCTCAAGAACCCCGACAAGTACACCGCGCTCGGGGCCAAGATCCCC 733681817 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| ||| |||| || ||| || || || ||||| || |||||||| ||| || Sbjct 733681818 AAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGCAAGACGCTGCTCGCCCGGGCCGTC 733681877 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || || || | || || ||| || ||| | || | | || || ||| | || Sbjct 733681878 GCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAGTTCGTCGAGCTCTTC 733681937 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || || || || || ||||| | || ||||| || | ||| | || || Sbjct 733681938 GTCGGCGTCGGCGCGTCCAGGGTGAGGGACCTCTTCGAGAAGGCCAAGGCCAAGGCGCCC 733681997 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTA 175528 || || |||||||| ||||||||||| || || || | ||| || | || || ||| Sbjct 733681998 TGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGTGGTGCCGGAATGG-G 733682056 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || | || || ||||| || || || ||||| || || ||||| |||||||| |||| Sbjct 733682057 TG-GGGGGAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCACGGAGATGGACGGCT 733682115 Query 175589 T 175589 | Sbjct 733682116 T 733682116 >seq13 Length=727576108 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||| | | || || || || || ||||| ||||||||||| || || || Sbjct 164670052 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 164669993 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 164669992 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 164669933 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA--CT 65247 || || ||||| || ||||| || ||| || || ||| |||| | | | || Sbjct 164669932 GCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCT 164669873 Query 65248 TTGCGTAA---TAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 ||| | | || | | | ||| || || |||||| ||||| || || Sbjct 164669872 CCGCGGCAAGCTGGA-CGAGTCCCG----CGTCTTCGAGATCGTGTCCGAGGCCGTGGAC 164669818 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAG 65364 || |||| | |||| ||| ||||| ||||| || ||| |||| |||||| || Sbjct 164669817 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 164669758 Query 65365 AAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCA 65424 ||| | ||||||| |||| || | || || || ||| | | |||| ||| | Sbjct 164669757 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTC-ATGGCGCTGGGCTGCAA 164669699 Query 65425 -CCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | | ||||| | || || || |||| ||||| ||| || | || || Sbjct 164669698 GAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAA 164669639 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||| |||||||| || || || || Sbjct 164669638 GACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 164669606 Score = 105 bits (116), Expect = 8e-18 Identities = 196/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 662716186 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 662716245 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || ||| ||||||| |||||||| || || | |||| | Sbjct 662716246 AAGGAGAATGCTCCTTGCATAGTGTTCGTTGATGAAATTGATGCAGTTGGGAGGCAAAGA 662716305 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| ||| Sbjct 662716306 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTCAATCAGCTA 662716359 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || ||||||||||| ||||| | |||||||| | ||| |||| ||||| || Sbjct 662716360 CTGACTGAGATGGATGGTTTTGAGGGCAACACTGGCATCATTGTTGTTGCTGCCACCAAC 662716419 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || ||| | ||| ||| | ||| | || || || ||||| Sbjct 662716420 AGGGCTGACATCTTGGATTCCGCTTTGCTTAGACCTGGGCGCTTTGA 662716466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 177592 GTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACA 177651 || ||||||||||| ||||||| || || || || ||||||||||||||||| |||||| Sbjct 37083111 GTGGCGACAACATAATCATCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGCCTCAACA 37083052 Query 177652 TAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG 177698 || ||| ||| ||||| || ||||| ||| |||||| ||||| Sbjct 37083051 TAATCCCCGGCGAAGCCCCAATCCCTGGCGGCGGAGAGGTTGCCGAG 37083005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 239/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | |||||||| |||||| | ||||| | || | || |||||||||||| Sbjct 715483138 GAGGTCGTGGATTTCCTCAAGAACCCCGACAAGTACACCGCGCTCGGGGCCAAGATCCCC 715483197 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| ||| |||| || ||| || || || ||||| || |||||||| ||| || Sbjct 715483198 AAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACGCTGCTCGCCCGGGCCGTC 715483257 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || || || | || || ||| || ||| | || | | || || ||| | || Sbjct 715483258 GCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAGTTCGTCGAGCTCTTC 715483317 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || || || || || ||||| | || ||||| || | ||| | || || Sbjct 715483318 GTCGGCGTCGGCGCGTCCAGGGTGAGGGACCTCTTCGAGAAGGCCAAGGCCAAGGCGCCC 715483377 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTA 175528 || || |||||||| ||||||||||| || || || | ||| || | || || ||| Sbjct 715483378 TGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGTGGTGCCGGAATGG-G 715483436 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || | || || ||||| || || || ||||| || || ||||| |||||||| |||| Sbjct 715483437 TG-GGGGGAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCACGGAGATGGACGGCT 715483495 Query 175589 T 175589 | Sbjct 715483496 T 715483496 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 75188 |||||| ||||| || ||||| ||| |||| || || |||| | || || | || Sbjct 79584998 GGGACTTTGATTATGACTACTTCGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAGC 79584939 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 ||| ||| | | | |||| || ||| ||||||| ||| | || || | || |||| Sbjct 79584938 TCGGTGGAGTTGTTGTTGAAAGGCCGCAGCACATGTTAATGAGAGTTTCAGTAGGGATCC 79584879 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| |||||||| |||| | | || ||| | |||||||| | ||| | Sbjct 79584878 ACAAGGATGACATTGACTCTGCCATCAGAACTTACCATCTCATGTCCCAGCGCTGGTTTA 79584819 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| || | |||||||| ||||||||||| || || ||||| ||| Sbjct 79584818 CTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCGAGACCTCAG 79584772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76139 AATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAAT 76198 ||||||||| | | ||||| | |||| |||||| ||||| ||||| | | ||||||| Sbjct 79583104 AATCTAAACAAAATAATTGATATGAATTATTATCCGGTTGAAACTGCAAGGAGGTCTAAT 79583045 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGC 76258 ||||||||||| || |||||| | || ||||| || | || || ||| || || Sbjct 79583044 ATGCGACACAGGCCAATTGGTATTGGGGTTCAGGGCTTGGCAGACACATTCATGTTACTT 79582985 Query 76259 CGCTACGCATTTGATTCA 76276 || |||||||||||| Sbjct 79582984 GGCATGGCATTTGATTCA 79582967 >seq7 Length=726427787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || || |||||||| ||||||| || || || || ||||||||||||||||| Sbjct 662788121 CTCCTCGGTGGCAACAACATAGTCATCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 662788062 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG 177698 || ||||| ||| ||| ||||| || ||||| ||| |||||| ||||| Sbjct 662788061 CTCGACATAATCCCCGGCGAAGCCCCAATCCCTGGCGGCGGAGAGGTTGCCGAG 662788008 >seq11 Length=621432051 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTC--AACGGC 75188 |||| ||| | | || ||||||| | || || ||||||| | ||||| | || | Sbjct 597006240 GACTTTGACTACGATTTCTTTGGTTTTAAGACGCTTGAGAGGTCTTATCTACTGAAAG-- 597006183 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 | | ||| | | |||||| ||||| | ||||| ||| |||| | | || || | Sbjct 597006182 TTGGTGGGAAGGTTGTGGAAAGACCACAACATATGTTAATGAGGGTTTCTGTTGGGATAC 597006123 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| || ||||| |||| | | |||||| ||| ||||||||| | ||| | Sbjct 597006122 ACAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCCCAGCGCTGGTTTA 597006063 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| || | |||||||| ||||||||||| || ||||| || || Sbjct 597006062 CTCATGCTTCCCCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCA 597006017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595457489865920