Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq129631 203 2e-47 >seq129631 Length=630463 Score = 203 bits (224), Expect = 2e-47 Identities = 298/420 (71%), Gaps = 4/420 (1%) Strand=Plus/Plus Query 9235 CACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCA 9294 ||| ||| |||| || || || ||||| || ||||| || || | ||||| || || || Sbjct 522199 CACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCA 522258 Query 9295 ATTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATC 9354 ||| || || || || ||| ||| | | |||| |||| || || ||||| ||| | Sbjct 522259 ATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAACTCTATTAATGCTACAAC 522318 Query 9355 AGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTAT 9414 | ||||| || | || ||||| || || ||||| || ||||||||||| |||| || Sbjct 522319 TAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAAT 522378 Query 9415 CCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATT 9474 ||||| ||||| | || | ||| ||||| | ||||| || ||||| || || Sbjct 522379 TCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTT 522438 Query 9475 CTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGC 9534 || ||||||||||||| ||||| |||| |||| ||||| || ||| | || || || Sbjct 522439 TTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGC 522498 Query 9535 GGCAACGGTATTCTACCCAATGTGGCACCTAG--AGTACAAATCACTAATCGTACTCAAG 9592 ||||| || || |||||||| ||||| |||| | | |||| || | || | || Sbjct 522499 CGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAAT--TTATTAGTTTTAAAA 522556 Query 9593 AACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAAT 9652 || || | || || |||||||| | ||||||||| | || || | ||||||||||||| Sbjct 522557 AATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAAT 522616 Score = 187 bits (206), Expect = 2e-42 Identities = 562/863 (65%), Gaps = 51/863 (6%) Strand=Plus/Plus Query 10997 TACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTC 11056 || || ||||| ||| || || ||||||| ||||||| | | || ||||| ||||| || Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322 Query 11057 TGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGAC-TG 11114 ||| | || |||||| | ||| | || |||| |||| || | || ||| | || | Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCA--AAATTTACCTT 524380 Query 11115 ATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCC 11174 | || ||||| || || || ||||| | || || ||||| ||||| || || || | Sbjct 524381 CTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTC 524440 Query 11175 AAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTT 11234 |||| | || || || || || || | ||||| || || | || ||| | ||||| | Sbjct 524441 AAGGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACAT 524500 Query 11235 GGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTC 11294 || | ||||| ||| || || || || || || |||||||| ||||| || ||| Sbjct 524501 GGATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTA 524560 Query 11295 GCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCC 11354 | |||||| | ||| | || | | || || |||||| || || ||||| |||| Sbjct 524561 GAAATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTA 524620 Query 11355 TAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATC--------------TT 11400 || || || |||||||| || ||| || || | | || || Sbjct 524621 ATGATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATT 524680 Query 11401 GGCATGCA-------AAG---AGCATGAGCTAAACGGCAAACACA-------CAATGCGC 11443 ||||| | ||| | ||| | | || || ||| | | |||| Sbjct 524681 GGCATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAA 524740 Query 11444 GACCTA--AAGAAAAAGT-TGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTT 11500 || || || |||||| | || | || | || ||| || ||| ||||||| || Sbjct 524741 -ACTTATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATT 524799 Query 11501 CGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGT 11560 | || ||||||||||| ||||||||||| ||||| |||||| | || || |||||||| Sbjct 524800 AGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAATGGAAGGA 524859 Query 11561 AATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAG 11620 ||||||||||| ||| | || || || ||||||||| ||||| | || || || Sbjct 524860 AATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGAACTCAA 524919 Query 11621 CACATGCTGAAGATGTGGAACAACG------GCACCGATGATATGGAAATGGCTTCTATC 11674 || || | || || | || |||| | ||| ||||| ||| | |||| Sbjct 524920 CATATTTTAAATATTTTAAATAACGAAAAAAATAACGAAAATATGAAAA---ATACTATT 524976 Query 11675 GCACATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAA 11734 | || || | |||||| |||| ||||||| | || ||||||||| ||| Sbjct 524977 TTA---GAATGCAGAGAAGAGGCAATTAAAATATTTATATCTGCTTCAGAACAAGAAAAA 525033 Query 11735 GACTGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTA 11794 | ||||| || ||| | || |||||||| ||| | ||| |||| ||||||| || Sbjct 525034 AAATGGGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATCAAGATATATTA 525093 Query 11795 TGTGAATATGTTGAGTACATCAC 11817 ||| ||||| | || || || || Sbjct 525094 TGTCAATATATAGAATATATTAC 525116 Score = 141 bits (156), Expect = 6e-29 Identities = 297/436 (68%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 10416 TACAGATGAATTGGAATTGGTTGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTA 10475 |||| | |||||||||| || || || | ||| | |||| || | || || | Sbjct 523380 TACATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGAAATTCCA 523439 Query 10476 CTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCA 10535 || ||||||| || |||||||| ||||| |||||||| ||||||| || || || || | Sbjct 523440 CTTTATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACTAATGGTA 523499 Query 10536 TCGAACCACCTCGTGGCTACATGTCAGTTAAGCAG--TCGAAGGATGGCATCTTAAAACA 10593 | ||||| || | || | ||||||| | || || || ||||| || | ||| Sbjct 523500 TTGAACCTCCAAGAGGTTT--TGTCAGTATAAAAGCTTCTAAAGATGGAATGCTGCGACA 523557 Query 10594 AATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGA 10653 | | || || | ||| | |||| ||| | |||| || ||||| ||| |||| | | Sbjct 523558 AGTGGTTCCAGAATATAAAAAATTGAAATATGAATATGAATTACTTTGGGATATACCAAA 523617 Query 10654 CAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTC 10713 || || || ||||| ||| | || || || |||||||||||| | ||||| ||||||| Sbjct 523618 TAATACAGGATACTTAGAACTTGTGGCAATTATGCAGAAGTTTATTGATCAATCTATTTC 523677 Query 10714 AGCAAACACTAACTACGACCCAGAAAACTACCCAGAAA--GTAAGGTTCCAATCAAA-AA 10770 || |||||||| || || || ||||| | ||| || | || || ||| || Sbjct 523678 AGTTAACACTAATTATGATCC--AAAACGATTTTTAAATGAAAAAATACCTATAAAACAA 523735 Query 10771 GTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTGTACTACCACAA 10830 ||| | | ||||| | ||| |||| ||| || || || || || || || || || Sbjct 523736 CTTA-TATATGATTTACTTACAGCATATAAACTTGGAATAAAAACTCTTTATTATCAAAA 523794 Query 10831 CACACGAGATGGTGCT 10846 || || ||||||||| Sbjct 523795 TACTCGTGATGGTGCT 523810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342349422713546