Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_021073.1
Length=107218
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 203 2e-47
>seq129631
Length=630463
Score = 203 bits (224), Expect = 2e-47
Identities = 298/420 (71%), Gaps = 4/420 (1%)
Strand=Plus/Plus
Query 9235 CACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCA 9294
||| ||| |||| || || || ||||| || ||||| || || | ||||| || || ||
Sbjct 522199 CACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCA 522258
Query 9295 ATTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATC 9354
||| || || || || ||| ||| | | |||| |||| || || ||||| ||| |
Sbjct 522259 ATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATTTAAACTCTATTAATGCTACAAC 522318
Query 9355 AGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTAT 9414
| ||||| || | || ||||| || || ||||| || ||||||||||| |||| ||
Sbjct 522319 TAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAAT 522378
Query 9415 CCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATT 9474
||||| ||||| | || | ||| ||||| | ||||| || ||||| || ||
Sbjct 522379 TCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTT 522438
Query 9475 CTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGC 9534
|| ||||||||||||| ||||| |||| |||| ||||| || ||| | || || ||
Sbjct 522439 TTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGC 522498
Query 9535 GGCAACGGTATTCTACCCAATGTGGCACCTAG--AGTACAAATCACTAATCGTACTCAAG 9592
||||| || || |||||||| ||||| |||| | | |||| || | || | ||
Sbjct 522499 CGCAACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAAT--TTATTAGTTTTAAAA 522556
Query 9593 AACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAAT 9652
|| || | || || |||||||| | ||||||||| | || || | |||||||||||||
Sbjct 522557 AATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAAT 522616
Score = 187 bits (206), Expect = 2e-42
Identities = 562/863 (65%), Gaps = 51/863 (6%)
Strand=Plus/Plus
Query 10997 TACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTC 11056
|| || ||||| ||| || || ||||||| ||||||| | | || ||||| ||||| ||
Sbjct 524263 TATGATCAACAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTT 524322
Query 11057 TGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGAC-TG 11114
||| | || |||||| | ||| | || |||| |||| || | || ||| | || |
Sbjct 524323 TGGAGACCAGAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCA--AAATTTACCTT 524380
Query 11115 ATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCC 11174
| || ||||| || || || ||||| | || || ||||| ||||| || || || |
Sbjct 524381 CTAACGAAAAACATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTC 524440
Query 11175 AAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTT 11234
|||| | || || || || || || | ||||| || || | || ||| | ||||| |
Sbjct 524441 AAGGAAGAAGTCCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACAT 524500
Query 11235 GGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTC 11294
|| | ||||| ||| || || || || || || |||||||| ||||| || |||
Sbjct 524501 GGATTGAAACATGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTA 524560
Query 11295 GCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCC 11354
| |||||| | ||| | || | | || || |||||| || || ||||| ||||
Sbjct 524561 GAAATATTATTAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTA 524620
Query 11355 TAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATC--------------TT 11400
|| || || |||||||| || ||| || || | | || ||
Sbjct 524621 ATGATCGTGCAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATT 524680
Query 11401 GGCATGCA-------AAG---AGCATGAGCTAAACGGCAAACACA-------CAATGCGC 11443
||||| | ||| | ||| | | || || ||| | | ||||
Sbjct 524681 GGCATTTACTTGGAGAAGGACATCATAAAATTAATGGGAAAAAAATTGAAATCAATTTAA 524740
Query 11444 GACCTA--AAGAAAAAGT-TGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTT 11500
|| || || |||||| | || | || | || ||| || ||| ||||||| ||
Sbjct 524741 -ACTTATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAGCCATT 524799
Query 11501 CGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGT 11560
| || ||||||||||| ||||||||||| ||||| |||||| | || || ||||||||
Sbjct 524800 AGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAAATAATGGAAGGA 524859
Query 11561 AATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAG 11620
||||||||||| ||| | || || || ||||||||| ||||| | || || ||
Sbjct 524860 AATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGAACTCAA 524919
Query 11621 CACATGCTGAAGATGTGGAACAACG------GCACCGATGATATGGAAATGGCTTCTATC 11674
|| || | || || | || |||| | ||| ||||| ||| | ||||
Sbjct 524920 CATATTTTAAATATTTTAAATAACGAAAAAAATAACGAAAATATGAAAA---ATACTATT 524976
Query 11675 GCACATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAA 11734
| || || | |||||| |||| ||||||| | || ||||||||| |||
Sbjct 524977 TTA---GAATGCAGAGAAGAGGCAATTAAAATATTTATATCTGCTTCAGAACAAGAAAAA 525033
Query 11735 GACTGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTA 11794
| ||||| || ||| | || |||||||| ||| | ||| |||| ||||||| ||
Sbjct 525034 AAATGGGCTAAATATTTGTTTCAAGATGGTTCGATGTTGGGATTAAATCAAGATATATTA 525093
Query 11795 TGTGAATATGTTGAGTACATCAC 11817
||| ||||| | || || || ||
Sbjct 525094 TGTCAATATATAGAATATATTAC 525116
Score = 141 bits (156), Expect = 6e-29
Identities = 297/436 (68%), Gaps = 10/436 (2%)
Strand=Plus/Plus
Query 10416 TACAGATGAATTGGAATTGGTTGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTA 10475
|||| | |||||||||| || || || | ||| | |||| || | || || |
Sbjct 523380 TACATTTAAATTGGAATTCATTACGAAAAAAAATTAAAAAATATGGATTAAGAAATTCCA 523439
Query 10476 CTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCA 10535
|| ||||||| || |||||||| ||||| |||||||| ||||||| || || || || |
Sbjct 523440 CTTTATCTGCTTTAATGCCTTCAGAAACTTCTTCTCAAATATCTAATGCTACTAATGGTA 523499
Query 10536 TCGAACCACCTCGTGGCTACATGTCAGTTAAGCAG--TCGAAGGATGGCATCTTAAAACA 10593
| ||||| || | || | ||||||| | || || || ||||| || | |||
Sbjct 523500 TTGAACCTCCAAGAGGTTT--TGTCAGTATAAAAGCTTCTAAAGATGGAATGCTGCGACA 523557
Query 10594 AATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGA 10653
| | || || | ||| | |||| ||| | |||| || ||||| ||| |||| | |
Sbjct 523558 AGTGGTTCCAGAATATAAAAAATTGAAATATGAATATGAATTACTTTGGGATATACCAAA 523617
Query 10654 CAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTC 10713
|| || || ||||| ||| | || || || |||||||||||| | ||||| |||||||
Sbjct 523618 TAATACAGGATACTTAGAACTTGTGGCAATTATGCAGAAGTTTATTGATCAATCTATTTC 523677
Query 10714 AGCAAACACTAACTACGACCCAGAAAACTACCCAGAAA--GTAAGGTTCCAATCAAA-AA 10770
|| |||||||| || || || ||||| | ||| || | || || ||| ||
Sbjct 523678 AGTTAACACTAATTATGATCC--AAAACGATTTTTAAATGAAAAAATACCTATAAAACAA 523735
Query 10771 GTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTGTACTACCACAA 10830
||| | | ||||| | ||| |||| ||| || || || || || || || || ||
Sbjct 523736 CTTA-TATATGATTTACTTACAGCATATAAACTTGGAATAAAAACTCTTTATTATCAAAA 523794
Query 10831 CACACGAGATGGTGCT 10846
|| || |||||||||
Sbjct 523795 TACTCGTGATGGTGCT 523810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 342349422713546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |