Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq13 96.9 6e-15
seq11 95.1 2e-14
seq14 87.8 3e-12
>seq13
Length=727576108
Score = 96.9 bits (106), Expect = 6e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || |||||||| || || | ||| || || || || || || || ||
Sbjct 657438253 ATCCTCAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTT 657438194
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||| || || | ||| | ||| ||| ||||||||||||||||| || || || ||
Sbjct 657438193 GTCTTGGATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGAT 657438134
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || ||||| ||||||||
Sbjct 657438133 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 657438098
>seq11
Length=621432051
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||| | ||| ||||| | | || || |||| || | |||| ||| || | |||||
Sbjct 492790485 AATCTGTATGCCACCACGTAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTAGATATT 492790544
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|| || | ||||| | || || | || ||||||||||| || | ||||| ||
Sbjct 492790545 GTAATCCGCCAACGTACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTG 492790604
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||||| || || ||||| ||||| || || |||| | | ||| ||| || || ||
Sbjct 492790605 GTCAGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTCCACATTATCAATGGTGTCAGA 492790664
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || || || || || || || ||||||||||| ||||| || |||||
Sbjct 492790665 GCTCTCAACCTCAAGTGTAATGGTCTTCCCGGTTAGCGTTTTGACAAAGATCTGCAT 492790721
Score = 95.1 bits (104), Expect = 2e-14
Identities = 149/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| ||||| || | |||| ||| || |||||| || || | || || | |||
Sbjct 492790738 AGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCC 492790797
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|| | || ||||| ||||| || | ||||| || ||||| || || |||||||||||
Sbjct 492790798 TCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTATCC 492790856
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| || || | || | ||| ||| || ||||| |||||| || ||||| || ||
Sbjct 492790857 TGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATGGTC 492790916
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || |||||||| |||||
Sbjct 492790917 TTTCCGGTTAGTGTCTTGACAAATATCTGCAT 492790948
>seq14
Length=755408349
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || |||||||| || || | ||| || || || || || || |||||
Sbjct 638076792 ATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGCTGCTGGTCTGGGGGGATGCCCTCTTT 638076733
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || || || | ||| | ||| || || |||||||||||||| || || || ||
Sbjct 638076732 GTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAACCTCGAGGGTGAT 638076673
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || ||||| ||||||||
Sbjct 638076672 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 638076637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897977286758880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |