Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-15 seq11 95.1 2e-14 seq14 87.8 3e-12 >seq13 Length=727576108 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || | ||| || || || || || || || || Sbjct 657438253 ATCCTCAAGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTT 657438194 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | ||| ||| ||||||||||||||||| || || || || Sbjct 657438193 GTCTTGGATCTTCGCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGAT 657438134 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 657438133 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 657438098 >seq11 Length=621432051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| | ||| ||||| | | || || |||| || | |||| ||| || | ||||| Sbjct 492790485 AATCTGTATGCCACCACGTAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTAGATATT 492790544 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | ||||| | || || | || ||||||||||| || | ||||| || Sbjct 492790545 GTAATCCGCCAACGTACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTG 492790604 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| ||||| || || |||| | | ||| ||| || || || Sbjct 492790605 GTCAGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTCCACATTATCAATGGTGTCAGA 492790664 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || ||||||||||| ||||| || ||||| Sbjct 492790665 GCTCTCAACCTCAAGTGTAATGGTCTTCCCGGTTAGCGTTTTGACAAAGATCTGCAT 492790721 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || ||||| || | |||| ||| || |||||| || || | || || | ||| Sbjct 492790738 AGGACCAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCC 492790797 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || ||||| ||||| || | ||||| || ||||| || || ||||||||||| Sbjct 492790798 TCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTATCC 492790856 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || || | || | ||| ||| || ||||| |||||| || ||||| || || Sbjct 492790857 TGGATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATGGTC 492790916 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || |||||||| ||||| Sbjct 492790917 TTTCCGGTTAGTGTCTTGACAAATATCTGCAT 492790948 >seq14 Length=755408349 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || | ||| || || || || || || ||||| Sbjct 638076792 ATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGCTGCTGGTCTGGGGGGATGCCCTCTTT 638076733 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||| | ||| || || |||||||||||||| || || || || Sbjct 638076732 GTCCTGGATCTTCGCTTTGACATTATCGATCGTGTCGGAAGACTCAACCTCGAGGGTGAT 638076673 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 638076672 GGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 638076637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897977286758880