Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 9e-20
seq11 100 6e-16
seq13 91.5 3e-13
seq14 86.0 1e-11
>seq12
Length=703217322
Score = 113 bits (124), Expect = 9e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | || || | || || || | ||||| ||| || |||||| |||||
Sbjct 511296484 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 511296543
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| ||||| || |||| || | || || ||||||||||| | ||||| || |||||
Sbjct 511296544 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 511296603
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| ||||| || || || || |||||| || | || || ||
Sbjct 511296604 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 511296663
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||| ||||| || ||||||| ||| || | ||||||||||||
Sbjct 511296664 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 511296713
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392
||| | ||| | ||||| ||| |||||||| | || || || |||| |||| ||
Sbjct 511296282 ATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCCAAGGTACGCCCATCCTCCAGCTG 511296341
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
|| || |||||||| | ||||| |||||||| || ||||| || || || || || ||
Sbjct 511296342 CTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTT 511296401
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
|| |||||| || | || || || || || ||||||||||| || |||||
Sbjct 511296402 TGCCTTCACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTTCCAGT 511296461
Query 192513 TAATGTTTTAATAAATATCTGCAT 192536
||| || || | ||| ||||||||
Sbjct 511296462 TAACGTCTTGACAAAAATCTGCAT 511296485
>seq11
Length=621432051
Score = 100 bits (110), Expect = 6e-16
Identities = 132/182 (73%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||| | || || || ||||| || | || || ||||||||||| | |||
Sbjct 492790768 ATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTC 492790827
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || ||||| || || ||||||||||| || || ||| || |||||| || |
Sbjct 492790828 TGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTCACATTATCAATGGTG 492790886
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || || ||||| ||||| || || |||| ||| || | ||||||||||
Sbjct 492790887 TCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTCTTGACAAATATCTGC 492790946
Query 192535 AT 192536
||
Sbjct 492790947 AT 492790948
Score = 96.9 bits (106), Expect = 7e-15
Identities = 167/242 (69%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354
||||||| || | ||||| | || || | || | ||| | ||| | ||||| |
Sbjct 492790254 TTTAGTTAAA--AGGCCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGG 492790311
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| |||||||| | || || || |||| |||| ||| || || |||||||| | |||
Sbjct 492790312 ATGTTATAATCTGCCAAGGTACGCCCATCCTCCAGTTGCTTCCCTGCAAAGATAAGCCTC 492790371
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| || || ||||| || || || || || || || |||||| || |
Sbjct 492790372 TGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTG 492790431
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || || ||||| ||||| || ||||||||||| || | ||| |||||
Sbjct 492790432 TCGGAGCTCTCCACCTCAAGAGTGATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGT 492790491
Query 192535 AT 192536
||
Sbjct 492790492 AT 492790493
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | |||| || | ||||| ||| || || || ||||||
Sbjct 492790947 ATGCCACCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCA 492791006
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| ||||| || |||| || | || || ||||| ||||| | ||||||||||| |||
Sbjct 492791007 GCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGATCTGGT 492791066
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || || || || ||||| || | || || ||
Sbjct 492791067 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCCGAACTCTCA 492791126
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||||||| ||||| || || || | ||||| | ||| ||||||||
Sbjct 492791127 ACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 492791176
>seq13
Length=727576108
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| ||||||| | |||||| | || || | || || ||||||||||| | |
Sbjct 657438052 GATATTGTAATCAGCAAGTGTTCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 657437993
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| ||||| |||| || ||||||||||| || | || ||||| || |
Sbjct 657437992 CTGCTGATCTGGTGGGTTTCCCTCCTTATCTTGTATCTTTTCCTTGACATTGTCGATCGT 657437933
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || || || || || || || ||||| || ||||| | | || | ||| |||||
Sbjct 657437932 GTCAGATGACTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGGATCTTCACAAAGATCTG 657437873
Query 192534 CAT 192536
|||
Sbjct 657437872 CAT 657437870
>seq14
Length=755408349
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || || || | || | |||||| ||| || ||||||
Sbjct 638037936 ATGCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCA 638037877
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || ||| || |||| || | ||| || ||||||||||| | || ||| || || ||
Sbjct 638037876 GCTAGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGC 638037817
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || ||||| || || || || ||||| || | || || || ||
Sbjct 638037816 GGGATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCG 638037757
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || || || | || || | ||| ||||||||
Sbjct 638037756 ACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCAT 638037707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982598875920900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |