Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12 113 9e-20 seq11 100 6e-16 seq13 91.5 3e-13 seq14 86.0 1e-11 >seq12 Length=703217322 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | ||||| ||| || |||||| ||||| Sbjct 511296484 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 511296543 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 511296544 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 511296603 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || || || |||||| || | || || || Sbjct 511296604 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 511296663 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||| || ||||||| ||| || | |||||||||||| Sbjct 511296664 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 511296713 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||| | ||||| ||| |||||||| | || || || |||| |||| || Sbjct 511296282 ATGAAGAGTGGATTCTTTTTGGATGTTATAATCTGCCAAGGTACGCCCATCCTCCAGCTG 511296341 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||| | ||||| |||||||| || ||||| || || || || || || Sbjct 511296342 CTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATCTT 511296401 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || |||||| || | || || || || || ||||||||||| || ||||| Sbjct 511296402 TGCCTTCACATTATCGATGGTGTCGGAGCTCTCCACCTCAAGAGTAATGGTCTTTCCAGT 511296461 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 ||| || || | ||| |||||||| Sbjct 511296462 TAACGTCTTGACAAAAATCTGCAT 511296485 >seq11 Length=621432051 Score = 100 bits (110), Expect = 6e-16 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| | || || || ||||| || | || || ||||||||||| | ||| Sbjct 492790768 ATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTC 492790827 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || ||||||||||| || || ||| || |||||| || | Sbjct 492790828 TGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTCACATTATCAATGGTG 492790886 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| ||||| || || |||| ||| || | |||||||||| Sbjct 492790887 TCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTCTTGACAAATATCTGC 492790946 Query 192535 AT 192536 || Sbjct 492790947 AT 492790948 Score = 96.9 bits (106), Expect = 7e-15 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 ||||||| || | ||||| | || || | || | ||| | ||| | ||||| | Sbjct 492790254 TTTAGTTAAA--AGGCCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGG 492790311 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||| | || || || |||| |||| ||| || || |||||||| | ||| Sbjct 492790312 ATGTTATAATCTGCCAAGGTACGCCCATCCTCCAGTTGCTTCCCTGCAAAGATAAGCCTC 492790371 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || ||||| || || || || || || || |||||| || | Sbjct 492790372 TGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTG 492790431 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| ||||| || ||||||||||| || | ||| ||||| Sbjct 492790432 TCGGAGCTCTCCACCTCAAGAGTGATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGT 492790491 Query 192535 AT 192536 || Sbjct 492790492 AT 492790493 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | |||| || | ||||| ||| || || || |||||| Sbjct 492790947 ATGCCACCACGGAGACGGAGGACTAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCA 492791006 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||| ||||| | ||||||||||| ||| Sbjct 492791007 GCCAATGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGTTGATCTGGT 492791066 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | || || || Sbjct 492791067 GGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCCGAACTCTCA 492791126 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| ||||| || || || | ||||| | ||| |||||||| Sbjct 492791127 ACTTCTAGAGTTATGGTCTTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 492791176 >seq13 Length=727576108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| | |||||| | || || | || || ||||||||||| | | Sbjct 657438052 GATATTGTAATCAGCAAGTGTTCGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGCCG 657437993 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| |||| || ||||||||||| || | || ||||| || | Sbjct 657437992 CTGCTGATCTGGTGGGTTTCCCTCCTTATCTTGTATCTTTTCCTTGACATTGTCGATCGT 657437933 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || || ||||| || ||||| | | || | ||| ||||| Sbjct 657437932 GTCAGATGACTCAACCTCAAGTGTGATGGTCTTGCCAGTGAGGATCTTCACAAAGATCTG 657437873 Query 192534 CAT 192536 ||| Sbjct 657437872 CAT 657437870 >seq14 Length=755408349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | || | |||||| ||| || |||||| Sbjct 638037936 ATGCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCA 638037877 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| || |||| || | ||| || ||||||||||| | || ||| || || || Sbjct 638037876 GCTAGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGC 638037817 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || ||||| || | || || || || Sbjct 638037816 GGGATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGGACTCG 638037757 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| |||||||| Sbjct 638037756 ACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCAT 638037707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982598875920900