Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11 100 5e-16 seq12 95.1 2e-14 seq14 86.0 1e-11 >seq11 Length=621432051 Score = 100 bits (110), Expect = 5e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || |||||| ||||||| |||| || || || || | || || ||| Sbjct 492790753 GTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCA 492790812 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | ||||| || ||||| || || ||||||||||| || || ||| || Sbjct 492790813 GCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTC 492790871 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 |||||| || || || || || || || ||||| ||||| || || |||| ||| Sbjct 492790872 ACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTC 492790931 Query 172053 TTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 492790932 TTGACAAATATCTGCAT 492790948 >seq12 Length=703217322 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || || | ||||| ||| || ||||| ||||| Sbjct 511296484 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 511296543 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | || || |||||||| || | ||||| |||||||| Sbjct 511296544 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 511296603 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || |||||| || || || || || Sbjct 511296604 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 511296663 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||||| ||| || | ||||||||||| Sbjct 511296664 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 511296713 >seq14 Length=755408349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||| | ||||| ||| || ||| || ||||| | Sbjct 637987148 CCACCACGAAGGCGGAGCACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGCC 637987089 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || | || |||||||| || || || | ||| ||||| || || Sbjct 637987088 AGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGG 637987029 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || || || || ||||| || || ||||||||||| || Sbjct 637987028 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGACGATTCAACC 637986969 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 637986968 TCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAAATCTGCAT 637986922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903448668097200