Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 5e-16
seq12 95.1 2e-14
seq14 86.0 1e-11
>seq11
Length=621432051
Score = 100 bits (110), Expect = 5e-16
Identities = 141/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932
|||| ||| || |||||| ||||||| |||| || || || || | || || |||
Sbjct 492790753 GTAGACTCCTTCTGAATATTGTAATCTGCCAAAGTGCGCTCATCCTCGAGCTGCTTTCCA 492790812
Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992
||||| || | ||||| || ||||| || || ||||||||||| || || ||| ||
Sbjct 492790813 GCAAAGATGAGCCTCTGCTG-TCAGGCGGGATACCTTCTTTATCCTGGATCTTAGCCTTC 492790871
Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052
|||||| || || || || || || || ||||| ||||| || || |||| |||
Sbjct 492790872 ACATTATCAATGGTGTCGGAGCTCTCAACGTCAAGAGTGATGGTCTTTCCGGTTAGTGTC 492790931
Query 172053 TTAATGAATATCTGCAT 172069
|| | |||||||||||
Sbjct 492790932 TTGACAAATATCTGCAT 492790948
>seq12
Length=703217322
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || || || | ||||| ||| || ||||| |||||
Sbjct 511296484 ATGCCACCACGTAGGCGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAATCC 511296543
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || | || || | || || |||||||| || | ||||| ||||||||
Sbjct 511296544 GCCAATGTACGCCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGC 511296603
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| ||||| || || || || |||||| || || || || ||
Sbjct 511296604 GGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCC 511296663
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| ||||| || ||||||| ||| || | |||||||||||
Sbjct 511296664 ACTTCAAGAGTGATGGTCTTTCCAGTTAGTGTCTTGACAAATATCTGCAT 511296713
>seq14
Length=755408349
Score = 86.0 bits (94), Expect = 1e-11
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | || | ||| | ||||| ||| || ||| || ||||| |
Sbjct 637987148 CCACCACGAAGGCGGAGCACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCAGCC 637987089
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| || || | || || | || |||||||| || || || | ||| ||||| || ||
Sbjct 637987088 AGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCCGGGGGG 637987029
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || || || || || || || || ||||| || || ||||||||||| ||
Sbjct 637987028 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGACGATTCAACC 637986969
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| || ||||| | || || | ||| ||||||||
Sbjct 637986968 TCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAAATCTGCAT 637986922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903448668097200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |