Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-17 seq13 95.1 1e-14 seq12 89.7 4e-13 >seq14 Length=755408349 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || |||||||| ||||| ||| | || ||| || Sbjct 638037935 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 638037994 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 638037995 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 638038054 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | ||| |||| ||||||||| Sbjct 638038055 CAGCGCCTGATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAAC 638038114 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 638038115 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 638038144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | |||||||| ||||| ||| |||| ||| || | Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| |||||||| ||| | ||| || || Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | ||| || || || || ||||||| | || | || ||||||||| Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 638076816 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || ||||| |||| Sbjct 638076817 ATCCAAAAAGAATCCACTCTGCACTTGGT 638076845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 620714627 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620714568 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 620714567 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620714508 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || |||| || |||||| Sbjct 620714507 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620714448 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | ||| ||||| | | || ||||| || Sbjct 620714447 ATTCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGAGGTGG 620714401 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | |||||||| ||||| ||| | || ||| || Sbjct 639897932 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 639897873 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 639897872 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 639897813 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || | |||||||||||| Sbjct 639897812 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCGGATTACAAC 639897753 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 639897752 ATTCAGAAGGAGTCTACTCTCCACTTGGTG 639897723 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 620933781 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620933722 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 620933721 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620933662 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || |||| || |||||| Sbjct 620933661 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620933602 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 620933601 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 620933572 >seq13 Length=727576108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| || || | |||||||| ||||| ||| | || |||| | Sbjct 643789630 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 643789571 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 643789570 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 643789511 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || ||||||| |||||| Sbjct 643789510 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 643789451 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 643789450 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 643789421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || |||| ||||| ||| | || ||| || Sbjct 657438326 ATGCAGATCTTTGTCAAGACCTTGACTAGCAAGACCATCACCCTGGAGGTGGAATCTTCA 657438385 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 657438386 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 657438445 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | || |||||||||||||| Sbjct 657438446 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACTCTGGCGGATTACAAC 657438505 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 657438506 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 657438535 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| || Sbjct 658874773 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 658874714 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| ||| | ||| ||| || Sbjct 658874713 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCGGACCAG 658874654 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || | |||||||||||| Sbjct 658874653 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAC 658874594 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 658874593 ATTCAGAAGGAGTCTACTGTACACTTGGTG 658874564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| || Sbjct 658881014 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 658880955 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| |||||||| ||| | ||| ||| || Sbjct 658880954 GACACCATTGACAACGTGAAGGCGAAGATCCAAGACAAAGAGGGCATCCCCCCGGACCAG 658880895 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || | |||||||||||| Sbjct 658880894 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAC 658880835 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 658880834 ATTCAGAAGGAGTCTACTCTCCACTTGGTG 658880805 >seq12 Length=703217322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || ||||| || || || | || ||| | Sbjct 511297169 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCA 511297110 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | || ||| ||| Sbjct 511297109 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 511297050 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | ||||| |||| ||||||||| Sbjct 511297049 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGAACATTGGCTGATTACAAC 511296990 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 511296989 ATCCAAAAGGAGTCTAC 511296973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412091231235062