Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq14 104 2e-17
seq13 95.1 1e-14
seq12 89.7 4e-13
>seq14
Length=755408349
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || |||||||| || || |||||||| ||||| ||| | || ||| ||
Sbjct 638037935 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 638037994
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 638037995 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 638038054
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| ||||| ||||| ||||||| | ||| |||| |||||||||
Sbjct 638038055 CAGCGCCTGATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAAC 638038114
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | ||| |||||
Sbjct 638038115 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 638038144
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| || || | |||||||| ||||| ||| |||| ||| || |
Sbjct 638076637 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 638076696
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || ||| |||||| |||||||| ||| | ||| || ||
Sbjct 638076697 GACACGATCGATAATGTCAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCAGACCAG 638076756
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | || | ||| || || || || ||||||| | || | || |||||||||
Sbjct 638076757 CAGCGGTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACTCTTGCTGATTACAAC 638076816
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481
|| ||||||||||| || ||||| ||||
Sbjct 638076817 ATCCAAAAAGAATCCACTCTGCACTTGGT 638076845
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || | || ||||| || || ||| | || |||| |
Sbjct 620714627 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620714568
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||| ||||| || ||| | ||| ||| ||
Sbjct 620714567 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620714508
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| ||||| ||||| ||||||| | | || |||| || ||||||
Sbjct 620714507 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620714448
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || || | ||| ||||| | | || ||||| ||
Sbjct 620714447 ATTCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGAGGTGG 620714401
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||| || || | |||||||| ||||| ||| | || ||| ||
Sbjct 639897932 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 639897873
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 639897872 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 639897813
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||||| ||||||| | || | ||||||||||||
Sbjct 639897812 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCGGATTACAAC 639897753
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | ||| |||||
Sbjct 639897752 ATTCAGAAGGAGTCTACTCTCCACTTGGTG 639897723
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || | || ||||| || || ||| | || |||| |
Sbjct 620933781 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620933722
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||| ||||| || ||| | ||| ||| ||
Sbjct 620933721 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620933662
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| ||||| ||||| ||||||| | | || |||| || ||||||
Sbjct 620933661 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620933602
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || || || | ||| |||||
Sbjct 620933601 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 620933572
>seq13
Length=727576108
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| |||||||| || || | |||||||| ||||| ||| | || |||| |
Sbjct 643789630 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 643789571
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 643789570 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 643789511
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| ||||| ||||| ||||||| | | || ||||||| ||||||
Sbjct 643789510 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 643789451
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || || || | ||| |||||
Sbjct 643789450 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 643789421
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || |||||||| || || || |||| ||||| ||| | || ||| ||
Sbjct 657438326 ATGCAGATCTTTGTCAAGACCTTGACTAGCAAGACCATCACCCTGGAGGTGGAATCTTCA 657438385
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 657438386 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 657438445
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| ||||| ||||| ||||||| | || ||||||||||||||
Sbjct 657438446 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACTCTGGCGGATTACAAC 657438505
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | ||| |||||
Sbjct 657438506 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 657438535
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | || ||||| ||||| ||| | || ||| ||
Sbjct 658874773 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 658874714
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| |||||||| ||| | ||| ||| ||
Sbjct 658874713 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCGGACCAG 658874654
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||||| ||||||| | || | ||||||||||||
Sbjct 658874653 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAC 658874594
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | ||| |||||
Sbjct 658874593 ATTCAGAAGGAGTCTACTGTACACTTGGTG 658874564
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | || ||||| ||||| ||| | || ||| ||
Sbjct 658881014 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCG 658880955
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| |||||||| ||| | ||| ||| ||
Sbjct 658880954 GACACCATTGACAACGTGAAGGCGAAGATCCAAGACAAAGAGGGCATCCCCCCGGACCAG 658880895
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||||| ||||||| | || | ||||||||||||
Sbjct 658880894 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAC 658880835
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| || || ||||| | ||| |||||
Sbjct 658880834 ATTCAGAAGGAGTCTACTCTCCACTTGGTG 658880805
>seq12
Length=703217322
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || |||||||| || | || ||||| || || || | || ||| |
Sbjct 511297169 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCA 511297110
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || ||| |||||| ||||| || ||| | || ||| |||
Sbjct 511297109 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 511297050
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || || || | ||| || || ||||| ||||||| | ||||| |||| |||||||||
Sbjct 511297049 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGAACATTGGCTGATTACAAC 511296990
Query 110453 ATTCAAAAAGAATCTAC 110469
|| ||||| || |||||
Sbjct 511296989 ATCCAAAAGGAGTCTAC 511296973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412091231235062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |