Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq14 95.1 1e-14 seq13 91.5 1e-13 seq12 86.0 5e-12 seq11 82.4 6e-11 >seq14 Length=755408349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||| ||||| ||| | || ||| || Sbjct 638037935 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 638037994 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 638037995 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 638038054 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | ||| |||| || |||||| Sbjct 638038055 CAGCGCCTGATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAAC 638038114 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 638038115 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 638038144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 620714627 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620714568 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 620714567 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620714508 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 620714507 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620714448 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 620714447 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 620714418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| || || ||| | || |||| | Sbjct 620933781 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACTATCACCTTGGAGGTGGAGTCATCT 620933722 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 620933721 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620933662 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||| ||||||||| Sbjct 620933661 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCAGACTACAAC 620933602 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 620933601 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 620933572 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| || || ||| | ||| |||| || Sbjct 643860256 ATGCAGATTTTTGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTGGAGTCTTCG 643860197 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || || | ||| ||| ||| Sbjct 643860196 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 643860137 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||| | || |||| || ||||| Sbjct 643860136 CAGCGCCTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGCACTTTGGCTGATTACAAT 643860077 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||||||| ||||| ||||| Sbjct 643860076 ATTCAAAAGGAGTCTACTCTGCACCTGGTG 643860047 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 620971123 ATGCAGATATTTGTGAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 620971064 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 620971063 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 620971004 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 620971003 CAGCGCCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 620970944 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 620970943 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 620970914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 621203802 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCGTCT 621203743 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 621203742 GACACCATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 621203683 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 621203682 CAGCGTCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 621203623 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 621203622 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 621203593 >seq13 Length=727576108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 643789630 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCATCT 643789571 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 643789570 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 643789511 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | | || |||||||||||||| Sbjct 643789510 CAGCGCCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 643789451 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 643789450 ATTCAGAAGGAGTCAACCCTTCACTTGGTG 643789421 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || |||| ||||| ||| | || ||| || Sbjct 657438326 ATGCAGATCTTTGTCAAGACCTTGACTAGCAAGACCATCACCCTGGAGGTGGAATCTTCA 657438385 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 657438386 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 657438445 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||| ||||| | || ||||||| |||||| Sbjct 657438446 CAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGCACTCTGGCGGATTACAAC 657438505 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 657438506 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 657438535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||| | || || | || || || ||||||||||||| || ||||||| Sbjct 673240125 GGATCAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCGGA 673240184 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| || |||||||| ||| ||||| ||||| | | ||||| || || Sbjct 673240185 CTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCTTGCGGGGCGG 673240238 >seq12 Length=703217322 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 142316343 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 142316284 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 142316283 GATACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 142316224 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||||| || || | || ||||||||| Sbjct 142316223 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAAC 142316164 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 142316163 ATCCAGAAGGAGTCCAC 142316147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | |||||||| || || || | || ||| | Sbjct 511297169 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACTATCACTCTTGAGGTCGAGAGTTCA 511297110 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | || ||| || Sbjct 511297109 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAA 511297050 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | |||| |||| || |||||| Sbjct 511297049 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGAACATTGGCTGATTACAAC 511296990 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 511296989 ATCCAAAAGGAGTCTAC 511296973 >seq11 Length=621432051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || |||| | Sbjct 54897293 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCG 54897234 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 54897233 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 54897174 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 54897173 CAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGACTACAAC 54897114 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 54897113 ATCCAGAAGGAGTCTACCCTTCACCTGGTG 54897084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398151813245326