Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq129631 152 6e-32 >seq129631 Length=630463 Score = 152 bits (168), Expect = 6e-32 Identities = 303/447 (68%), Gaps = 20/447 (4%) Strand=Plus/Minus Query 145943 TTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 146002 || ||||| ||| | ||||| | ||||| | || ||||| || | ||| | || || Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556 Query 146003 TTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCG 146062 || | || | | ||||||| ||| | ||||| ||||| || | | || || || Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496 Query 146063 CCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 146122 || || | |||||||||||| || ||||| || ||||| |||||| |||||| | ||| Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 522436 Query 146123 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGA----ACCTTCT---GC 146175 |||||| ||| ||||| ||||||| |||| ||| || | || || Sbjct 522435 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 522383 Query 146176 ACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGA 146235 ||||| ||| ||||||||||| || || || |||| ||| | || | |||||||| Sbjct 522382 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTG- 522324 Query 146236 TTCAGCAGATTT---GTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGA 146292 || || | | ||||| || || | ||| || |||||| | || ||||| Sbjct 522323 --CACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266 Query 146293 ACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTT 146352 ||| ||||||||||| || || | | |||| |||||| || || || ||||| ||||| Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206 Query 146353 CTTAGTTGACACAGCATCGTAAAAACG 146379 ||| || | |||| ||||| || Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCG 522179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553321784895040