Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq129631 149 1e-30 >seq129631 Length=630463 Score = 149 bits (164), Expect = 1e-30 Identities = 294/426 (69%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 78627 CTTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGT 78686 ||| || |||||| |||| ||| ||| | || |||| |||||||||||| |||| || Sbjct 522181 CTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGAGT 522240 Query 78687 TCGTACCCCGACACGCCAGTTTAGTTC--GTGTGTTAAGATTGAATCAGGCGACTCTTTG 78744 | || || || || || |||||||| |||||||| ||||||| | || ||| Sbjct 522241 AAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTA--ATTGAATGTGCAGATAATTTA 522298 Query 78745 CATTCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATC 78804 | || || |||| ||| ||||||||| || || | | || ||||| || Sbjct 522299 AACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAGGAATA 522358 Query 78805 GGTGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT-TCGTTCAGGTGAGATTC- 78862 || |||||| ||| ||||| ||| | || |||| | || | | |||| | Sbjct 522359 GGCATTAACGCTGGTCAAATTCGAGCTTTA--GGAAGTCCTATCAGAAATG-GAGAAGCA 522415 Query 78863 -GTCACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTC 78920 ||| || || ||| ||||| || | |||||||| |||| || || ||||| ||||| Sbjct 522416 TTTCATACCGGATGT-ATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGTTC 522474 Query 78921 TCAAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGT 78980 ||||||||| || | || || || || ||| | |||||| || ||||| ||||| | Sbjct 522475 TCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAAAT 522534 Query 78981 TGAAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCT 79040 |||||| | |||||| | || || || | ||| |||||||||| | | |||||||| Sbjct 522535 TGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCATCT 522594 Query 79041 TGACTA 79046 ||| || Sbjct 522595 TGATTA 522600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788683809447360