Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 205 3e-47
>seq129631
Length=630463
Score = 205 bits (226), Expect = 3e-47
Identities = 287/400 (72%), Gaps = 2/400 (1%)
Strand=Plus/Minus
Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822
|||| || | ||| |||| || |||||| || ||||| ||||| || ||||| ||||
Sbjct 200647 TAATATTTTATTAATTGGACCAACTGGTAGTGGAAAAACTTTATTAGCAGAAACACTGGC 200588
Query 188823 TGATATGTTACATGTACC-TCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881
| | ||| ||||||| | |||| || |||| |||||| ||||||| ||||| || |
Sbjct 200587 AAAATTATTAAATGTACCATTTAGC-ATTGCTGACGCAACTACTTTAACTGAAGCAGGAT 200529
Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATA 188941
| || || ||||| || ||||| || | | || | ||| | | | ||| ||
Sbjct 200528 ACGTCGGAGAAGACGTAGAAAATGTCATACAAAAACTATTGCAAAAATGTAAATACAATG 200469
Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001
|| || ||| ||| || ||||| ||||| || ||| ||||||||||| | |||||||
Sbjct 200468 TCAAAAAAGCAGAATTAGGGATTGTTTATATAGACGAAATAGATAAAATTTCAAGAAAAT 200409
Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061
| || | | || ||||| ||||||| ||||| ||||||||||| |||||||| ||||
Sbjct 200408 CTGATAATCCTTCTATTACTAGAGATGTTTCTGGGGAAGGAGTACAACAAGCTTTGTTAA 200349
Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121
|| | ||||||||||| | || | |||| || |||||||| | ||||| || || |
Sbjct 200348 AATTAATTGAAGGTACCTTAGCATCAATTCCACCACAAGGTGGAAGAAAACATCCACAAC 200289
Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTAT 189161
||||| | | || | |||| | ||||| || |||||
Sbjct 200288 AAGAATTTTTACAAGTTAATACTTCAAATATTTTATTTAT 200249
Score = 147 bits (162), Expect = 7e-30
Identities = 240/343 (70%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 206935 TCTGATTACAATAAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATGCTATT 206994
|| || || | |||||| |||| ||||| | ||||||| || || ||| ||||
Sbjct 530108 TCAGACTATATTAAAGGAAATGAAAAAGCAAGAGAAAGAATGAAAGTACAGTATAGTATT 530167
Query 206995 GGCGGAGCGAAAAATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAACTGGT 207054
| | |||||| | | || ||||||||| | || |||||| |||| |||||
Sbjct 530168 GCAGCTATAAAAAATGGACTGGTTGTTGGAACAGGAAACGCAGCAGAAACTATTACTGGA 530227
Query 207055 TTCTATACAAAATTTGGAGACAATGGAGTAGATATTTTACCTATAAGCGGTCTTACG-AA 207113
|||| ||||||| |||||| |||||| ||||||| || || | ||| ||
Sbjct 530228 TTCTTTACAAAACATGGAGATAATGGAACAGATATTA-ACTTAATTTCTAAATTAAATAA 530286
Query 207114 AAGACAAGGTAAAATGTTATTGGAAGAATTAAATGCTCCAGAGAGATTATATTTAAAAGT 207173
|||||| |||| | |||| || ||||||||||| ||| || ||||||||||||
Sbjct 530287 AAGACAGGGTAGATTGTTGTTAAAAGAATTAAATTGTCCTGATCATTTATATTTAAAAAA 530346
Query 207174 ACCAACAGCAGATCTTTTAGATGATAAACCATTACAAACAGATGAAGATGAGTTGGGTAT 207233
|||||| || |||||| |||||| || ||| | || ||| ||| | ||| |||||
Sbjct 530347 ACCAACTGCTGATCTTGAAGATGAAAACCCACAAAAAGAAGACGAACTAGCGTTAGGTAT 530406
Query 207234 GACTTACGATGAAATAGATAGTTACTTAGAAGGATTAGAAATA 207276
|| || ||||||| ||| ||| ||||||||| | |||||
Sbjct 530407 AACATATAATGAAATTGATGATTATTTAGAAGGAAAAAAAATA 530449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588868610440832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |