Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq129631 205 3e-47 >seq129631 Length=630463 Score = 205 bits (226), Expect = 3e-47 Identities = 287/400 (72%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| || | ||| |||| || |||||| || ||||| ||||| || ||||| |||| Sbjct 200647 TAATATTTTATTAATTGGACCAACTGGTAGTGGAAAAACTTTATTAGCAGAAACACTGGC 200588 Query 188823 TGATATGTTACATGTACC-TCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881 | | ||| ||||||| | |||| || |||| |||||| ||||||| ||||| || | Sbjct 200587 AAAATTATTAAATGTACCATTTAGC-ATTGCTGACGCAACTACTTTAACTGAAGCAGGAT 200529 Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATA 188941 | || || ||||| || ||||| || | | || | ||| | | | ||| || Sbjct 200528 ACGTCGGAGAAGACGTAGAAAATGTCATACAAAAACTATTGCAAAAATGTAAATACAATG 200469 Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001 || || ||| ||| || ||||| ||||| || ||| ||||||||||| | ||||||| Sbjct 200468 TCAAAAAAGCAGAATTAGGGATTGTTTATATAGACGAAATAGATAAAATTTCAAGAAAAT 200409 Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061 | || | | || ||||| ||||||| ||||| ||||||||||| |||||||| |||| Sbjct 200408 CTGATAATCCTTCTATTACTAGAGATGTTTCTGGGGAAGGAGTACAACAAGCTTTGTTAA 200349 Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121 || | ||||||||||| | || | |||| || |||||||| | ||||| || || | Sbjct 200348 AATTAATTGAAGGTACCTTAGCATCAATTCCACCACAAGGTGGAAGAAAACATCCACAAC 200289 Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTAT 189161 ||||| | | || | |||| | ||||| || ||||| Sbjct 200288 AAGAATTTTTACAAGTTAATACTTCAAATATTTTATTTAT 200249 Score = 147 bits (162), Expect = 7e-30 Identities = 240/343 (70%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 206935 TCTGATTACAATAAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATGCTATT 206994 || || || | |||||| |||| ||||| | ||||||| || || ||| |||| Sbjct 530108 TCAGACTATATTAAAGGAAATGAAAAAGCAAGAGAAAGAATGAAAGTACAGTATAGTATT 530167 Query 206995 GGCGGAGCGAAAAATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAACTGGT 207054 | | |||||| | | || ||||||||| | || |||||| |||| ||||| Sbjct 530168 GCAGCTATAAAAAATGGACTGGTTGTTGGAACAGGAAACGCAGCAGAAACTATTACTGGA 530227 Query 207055 TTCTATACAAAATTTGGAGACAATGGAGTAGATATTTTACCTATAAGCGGTCTTACG-AA 207113 |||| ||||||| |||||| |||||| ||||||| || || | ||| || Sbjct 530228 TTCTTTACAAAACATGGAGATAATGGAACAGATATTA-ACTTAATTTCTAAATTAAATAA 530286 Query 207114 AAGACAAGGTAAAATGTTATTGGAAGAATTAAATGCTCCAGAGAGATTATATTTAAAAGT 207173 |||||| |||| | |||| || ||||||||||| ||| || |||||||||||| Sbjct 530287 AAGACAGGGTAGATTGTTGTTAAAAGAATTAAATTGTCCTGATCATTTATATTTAAAAAA 530346 Query 207174 ACCAACAGCAGATCTTTTAGATGATAAACCATTACAAACAGATGAAGATGAGTTGGGTAT 207233 |||||| || |||||| |||||| || ||| | || ||| ||| | ||| ||||| Sbjct 530347 ACCAACTGCTGATCTTGAAGATGAAAACCCACAAAAAGAAGACGAACTAGCGTTAGGTAT 530406 Query 207234 GACTTACGATGAAATAGATAGTTACTTAGAAGGATTAGAAATA 207276 || || ||||||| ||| ||| ||||||||| | ||||| Sbjct 530407 AACATATAATGAAATTGATGATTATTTAGAAGGAAAAAAAATA 530449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588868610440832