Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq129631 149 7e-31 >seq129631 Length=630463 Score = 149 bits (164), Expect = 7e-31 Identities = 276/405 (68%), Gaps = 14/405 (3%) Strand=Plus/Minus Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778 || ||||| ||| | ||||| | ||||| | | || ||||||| ||| | || ||| Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556 Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838 || | ||| | || ||||||| ||| | ||||| ||||| || | | || || || Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496 Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898 || || | ||| |||||||||||||| ||||| || || | ||||||||||| | ||| Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 522436 Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGA---GCCTTC----AGC 139951 ||||| || || || |||| || |||| ||| | |||| ||| Sbjct 522435 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 522383 Query 139952 TCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGA 140011 ||| ||| |||| ||||| ||||| ||||| ||||||| ||||| || || ||||| | Sbjct 522382 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGC 522323 Query 140012 TGCTGCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACT 140071 | || | || ||| ||| | ||| || | || || | ||||| ||||| Sbjct 522322 ACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACT 522263 Query 140072 GAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGG 140116 ||||||||| | ||||| | |||||| |||||| || || || Sbjct 522262 AAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGG 522218 Score = 104 bits (114), Expect = 2e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 138063 ATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTGAATCCAT 138122 || || || || || ||||| || ||||| ||||| || || | ||| || | ||||||| Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499 Query 138123 GTTTCAAGTCCAACATCAGAACAGATATCAGCGAATGCGATAGCAGGTGCTCGTCCTTGA 138182 ||||| | | | | |||| ||| || ||||| ||| || ||||||| Sbjct 524498 GTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGA 524439 Query 138183 ACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGAAAATGCCTTGATCGTTTTCA 138242 | |||||||| | ||||||||||| || || | | ||||| || ||||| | Sbjct 524438 ATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAGAA 524379 Query 138243 GACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTACTTCTTCTGGACGCCAAAAG 138302 | | || || || | | | |||||| |||| |||| ||||||||| | |||||| Sbjct 524378 GGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAAAA 524319 Query 138303 AAGGAGAGTTGCTTTTCAGTCAACTTTTCAAA 138334 || || ||||| |||||| | | |||||||| Sbjct 524318 AATGAAAGTTGTTTTTCAATTAGTTTTTCAAA 524287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534125636708640