Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_024121.1
Length=167266
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 149 7e-31
>seq129631
Length=630463
Score = 149 bits (164), Expect = 7e-31
Identities = 276/405 (68%), Gaps = 14/405 (3%)
Strand=Plus/Minus
Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778
|| ||||| ||| | ||||| | ||||| | | || ||||||| ||| | || |||
Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556
Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838
|| | ||| | || ||||||| ||| | ||||| ||||| || | | || || ||
Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496
Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898
|| || | ||| |||||||||||||| ||||| || || | ||||||||||| | |||
Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAA 522436
Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGA---GCCTTC----AGC 139951
||||| || || || |||| || |||| ||| | |||| |||
Sbjct 522435 GGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAAAGC 522383
Query 139952 TCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGA 140011
||| ||| |||| ||||| ||||| ||||| ||||||| ||||| || || ||||| |
Sbjct 522382 TCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGC 522323
Query 140012 TGCTGCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACT 140071
| || | || ||| ||| | ||| || | || || | ||||| |||||
Sbjct 522322 ACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACT 522263
Query 140072 GAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGG 140116
||||||||| | ||||| | |||||| |||||| || || ||
Sbjct 522262 AAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGG 522218
Score = 104 bits (114), Expect = 2e-17
Identities = 186/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 138063 ATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTGAATCCAT 138122
|| || || || || ||||| || ||||| ||||| || || | ||| || | |||||||
Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499
Query 138123 GTTTCAAGTCCAACATCAGAACAGATATCAGCGAATGCGATAGCAGGTGCTCGTCCTTGA 138182
||||| | | | | |||| ||| || ||||| ||| || |||||||
Sbjct 524498 GTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGA 524439
Query 138183 ACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGAAAATGCCTTGATCGTTTTCA 138242
| |||||||| | ||||||||||| || || | | ||||| || ||||| |
Sbjct 524438 ATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAGAA 524379
Query 138243 GACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTACTTCTTCTGGACGCCAAAAG 138302
| | || || || | | | |||||| |||| |||| ||||||||| | ||||||
Sbjct 524378 GGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAAAA 524319
Query 138303 AAGGAGAGTTGCTTTTCAGTCAACTTTTCAAA 138334
|| || ||||| |||||| | | ||||||||
Sbjct 524318 AATGAAAGTTGTTTTTCAATTAGTTTTTCAAA 524287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534125636708640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |