Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq129631 141 1e-28 >seq129631 Length=630463 Score = 141 bits (156), Expect = 1e-28 Identities = 288/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986 ||||| || | ||| | |||||||| | |||||||| || || | ||||| ||||| Sbjct 522579 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCAT 522520 Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046 || || ||| | | || || || || || | || |||||||||||||||||||||||| Sbjct 522519 ATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACT 522460 Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106 || ||||||| ||||| | || |||||| || ||||| |||| || | | | Sbjct 522459 GCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTG 522400 Query 142107 ATCTTAGAACCTTCT---GCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTA 142163 | ||| || | || || |||| ||| |||| || || || || ||||||| | Sbjct 522399 A---TAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGA 522343 Query 142164 GAAATATATTCGATAATTGATGCTGAAGTTTT---GTTAATAGATTTTAACGAATCACCG 142220 |||| ||||| | ||| ||| |||| | |||||||| ||||| ||| | Sbjct 522342 GAAACATATTTTACAAT---TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCA 522286 Query 142221 GCTTCAATAACTACACAACTAGAGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATT 142280 |||||| | |||||| | || || ||||| || || | | |||| |||||| Sbjct 522285 CATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATC 522226 Query 142281 GGAGTAGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGAATAATATGTTTC 142340 || || || | || | || | ||| |||| |||| |||||| || ||||| ||| Sbjct 522225 GGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTC 522166 Query 142341 AAACG 142345 | ||| Sbjct 522165 ATACG 522161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534291726509920