Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq14 107 1e-18 seq13 89.7 3e-13 seq2 89.7 3e-13 seq9 87.8 1e-12 seq11 86.0 4e-12 seq10 86.0 4e-12 seq1 86.0 4e-12 seq12 82.4 5e-11 >seq14 Length=755408349 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| |||||||| ||||||||||| | Sbjct 638076863 CCACCACGGAGACGGAGAACCAAGTGCAGAGTGGATTCTTTTTGGATGTTGTAATCAGCA 638076804 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||| || |||||||| ||||| |||||||| ||| | || Sbjct 638076803 AGAGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAACCGCTGCTGGTCTGGGGGG 638076744 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| | || |||| || | |||||| || || || Sbjct 638076743 ATGCCCTCTTTGTCCTGGATCTTC-GCTTTGACATTATCGATCGTGTCGGAAGACTCAAC 638076685 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||| ||||| Sbjct 638076684 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 638076637 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || ||||||||||| | |||||||| | || || Sbjct 638038144 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGTGTGCGACCATCCTC 638038085 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| |||| |||||||| || | || | || || ||||| Sbjct 638038084 AAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 638038025 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| || | ||| | |||||| |||||||| || | ||||| || | Sbjct 638038024 GATCTTCGCCTTC-ACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCT 638037966 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || |||||||||||||| Sbjct 638037965 TGCCGGTCAAGGTCTTGACAAAGATCTGCAT 638037935 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| |||||| || ||||||||||| | Sbjct 638037933 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCT 638037874 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||| || || ||||| || | |||||||| || |||| Sbjct 638037873 AGTGTCCGCCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 638037814 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || || || || | |||| ||| | ||||| || || || Sbjct 638037813 ATACCCTCCTTATCCTGGATCTT-TGCCTTGACATTGTCAATTGTGTCAGAGGACTCGAC 638037755 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | ||| || ||||| |||||||| Sbjct 638037754 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAAATCTGCAT 638037707 >seq13 Length=727576108 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| |||| ||| ||| || || ||||||||||| | || ||||| | || || Sbjct 658874564 CACCAAGTGTACAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658874623 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| |||||||| || | || | || |||||||| Sbjct 658874624 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTG 658874683 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| |||| ||| | |||||| |||||||| || | ||||| || | Sbjct 658874684 GATCTTCGCCTTC-ACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCT 658874742 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 658874743 TGCCAGTAAGGGTCTTGACGAAGATCTGCAT 658874773 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || ||||||||||| | || || |||||||| || Sbjct 657250452 CACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGTTCGTCCTC 657250393 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || | || |||| | ||| ||| || |||| | || || ||||| Sbjct 657250392 GAGCTGCTTGCCTGTGAATATCAGATGCTACTGGTCCGGCGGGATGCCCTCCTTGTCTTG 657250333 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| ||| | | ||||| ||| | ||||||| || ||||| || | ||||| || | Sbjct 657250332 AATCTTC-GCCTTAACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCT 657250274 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || ||||||||||||| Sbjct 657250273 TGCCAGTGAGGGTCTTCGCAAAGATCTGCAT 657250243 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||| ||| || || ||||||||||| | || ||||| | || || Sbjct 658880805 CACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTGCGACCATCCTC 658880864 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| |||||||| || | || | || |||||||| Sbjct 658880865 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCTTG 658880924 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| || | ||| | |||||| |||||||| || | ||||| || | Sbjct 658880925 GATCTTCGCCTTC-ACGTTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCT 658880983 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 658880984 TGCCAGTAAGGGTCTTGACGAAGATCTGCAT 658881014 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || | | |||||| || ||||||||||| | | ||| || | || || Sbjct 657438306 ACCAAGTGGAGGGCGGACTCTTTCTGAATGTTGTAATCAGCAAAAGTGTGTCCATCCTCA 657438247 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| || |||||||| ||||| |||||||| ||| | || | || || ||||| Sbjct 657438246 AGTTGCTTGCCGGCAAATATCAACCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 657438187 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | || |||| ||| | || ||| || || || || | ||||| || || Sbjct 657438186 ATCTTC-GCTTTGACATTGTCAATCGTATCGGAAGACTCAACCTCGAGGGTGATGGTCTT 657438128 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| ||||| Sbjct 657438127 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 657438098 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||| | || ||||| | || || Sbjct 643789649 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTC 643789708 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || |||||||| |||| |||||||| || | || | || || ||||| Sbjct 643789709 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 643789768 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| |||| ||| | |||||| || || || || | ||||| || | Sbjct 643789769 GATCTTGGCCTTC-ACATTGTCAATGGTGTCTGAGGACTCAACCTCCAGGGTGATGGTCT 643789827 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||||||||||||| Sbjct 643789828 TGCCGGTGAGGGTCTTGACAAAGATCTGCATA 643789859 >seq2 Length=690537804 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || | |||||| |||| ||| ||||| |||| || | || ||||||||||| Sbjct 399335488 CTCCTTCTGCACGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 399335429 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || |||| | || || ||||| || || | | || | Sbjct 399335428 GATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT-GGACTTGACGT 399335370 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| ||||||||||| ||||| || | |||||| || || ||||| | || || | Sbjct 399335369 TGTCGACGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCTGTCAGGGTCTTCA 399335310 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 399335309 CGAAGATCTGCAT 399335297 >seq9 Length=700855599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | || ||||| | || || Sbjct 85444901 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 85444960 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| || | |||||||| ||| | || | ||| || ||||| Sbjct 85444961 GAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 85445020 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| ||| ||| | |||||| || || || || | |||||| || | Sbjct 85445021 GATCTTCGCCTTCA-CATTGTCGATGGTGTCTGAAGACTCGACCTCGAGCGTGATGGTCT 85445079 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||||||||||||| Sbjct 85445080 TGCCGGTGAGGGTCTTCACAAAGATCTGCATA 85445111 >seq11 Length=621432051 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || ||||||||||||| Sbjct 90160217 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 90160158 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || ||||| || |||| |||||||| || | || Sbjct 90160157 AAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGG 90160098 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 || || || ||||| || || | | || | ||| | ||||||| || |||| Sbjct 90160097 GACGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCA 90160039 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || |||||||||||||| Sbjct 90160038 CCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 90159990 >seq10 Length=712180895 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||| || || |||||||| || | | Sbjct 104923090 CCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 104923149 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || ||||| || | |||||||| || | || Sbjct 104923150 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGTGGG 104923209 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| ||| |||| |||||| ||| || || Sbjct 104923210 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCAGATGACTCGAC 104923268 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||| || || || || | || || || |||||||||||| Sbjct 104923269 CTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATA 104923317 >seq1 Length=593586810 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| ||||| | |||||| |||| ||| ||||| |||| || Sbjct 365730737 CACCAGGTGCAGCGTCGACTCCTTTTGCACGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 365730796 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| ||| |||| | || || ||||| Sbjct 365730797 GAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 365730856 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||| ||| | ||||||||| ||||| || | |||||| || | Sbjct 365730857 GATCTTGGCCTTGA-CATTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATTGTCT 365730915 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 365730916 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 365730946 >seq12 Length=703217322 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || ||||||||||| | Sbjct 153871067 ACCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGC 153871008 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| |||| |||||||| || | || Sbjct 153871007 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGG 153870948 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | || | ||| | |||||| ||||||| Sbjct 153870947 GATCCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCAGAGGATTCCA 153870889 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 153870888 CCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 153870840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328106557265280