Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_025447.1
Length=348532
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 172 1e-37
>seq129631
Length=630463
Score = 172 bits (190), Expect = 1e-37
Identities = 1351/2150 (63%), Gaps = 75/2150 (3%)
Strand=Plus/Plus
Query 23755 ATTTCCGTTTCTGAAATTGAAATCCGTGCACAGCTTCAGTTTTATGAAGGTATAGAAACC 23814
|| || |||||| || ||||| | ||| ||| |||| |||||| | |||| ||||
Sbjct 521702 ATATCTGTTTCTCAAGTTGAATTACGTTCACGTATTCAATTTTATAACAATATAAAAACT 521761
Query 23815 AGTACTATTCATGATATTCTAATAAAAGCAGCAGCAGAACTTATTTCTGAAGATACGCCG 23874
| ||| ||||| | | || ||||| |||||||| | |||||||||||||| ||
Sbjct 521762 GTGAATATACATGAGACAATTATTAAAGCTGCAGCAGATTTAATTTCTGAAGATACACCT 521821
Query 23875 AACTATCAATACGTTGCTGGAAGATTATTAAACTATAGTATTCGTAAGCAAGTATATGGA 23934
| |||||||| | || | |||| | | | | | || | || ||| || ||
Sbjct 521822 GATTATCAATATATGGCAGCAAGACTTGCTATTTTTCATCTTAGGAAAAAAGCTTACGGT 521881
Query 23935 CAGTATGACCCA---ATTAAGTATACTGCTCATCTTCAAGAAATGGTAGATACTAAAATA 23991
|| | ||| ||| ||| |||| | ||| | || ||||||| || || |
Sbjct 521882 CAATTTGAACCACCTATTCTGTATCAT---CATGTAAAAAAAATGGTCAATTTAGGAAAA 521938
Query 23992 TATGATCCTGAAATT-TTGGAGAAATATACTCTTCAAGAAA---TAGAAGAGCTTGGGCG 24047
||||| | ||||| || | || ||| || || ||||| ||||| | | |
Sbjct 521939 TATGA-CGAAAAATTATTACAAAATTATTCTTTTAAAGAATATGTAGAAATGAATT--CA 521995
Query 24048 TTATATCAAACATAAGCGTGACGACAAATTTACTTATGTTGCTATGCGTCAGTGGGAAGG 24107
|| |||| | ||| ||||||| || ||| |||||| || | || | |||||
Sbjct 521996 TT-TATCGATCATTGGCGTGACATGAATTTTTCTTATGCAGCAGTAAAACAATTAGAAGG 522054
Query 24108 AAAGTATCTTTATAAAAACCGAGTCACTAAGAAAATTTATGAAACCCCACAAATGGCATA 24167
||||||| | | |||| || || ||| |||| ||||||| ||||| | |||
Sbjct 522055 AAAGTATTTATTACAAAATCGTGTTACTGGAGAAATATATGAAAGTGCACAATTTTTATA 522114
Query 24168 TATGACTATTGCAGCAATCATCTTTATGGAGTATGATCGTTCTGTACGTATGTCATATGT 24227
||| || | ||| | | ||| | || || | | |||||| ||| |
Sbjct 522115 TATTTTAATATCTGCATGCTTATTTTCTAAATACGAAAAAAATATTCGTATGAATTATAT 522174
Query 24228 TAAAAAGTTTTATGACGCAGTAAGTAATTTTGACATCAGTCTTCCAACACCTATTATGGC 24287
| | |||||| | ||| | | |||| | || ||| || ||||| |||||| |
Sbjct 522175 TCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTC 522234
Query 24288 AGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTAGTACT-GAACGTTGGTGATA 24346
||| || | || || ||||| |||||||||||||| || | ||| || | ||||
Sbjct 522235 AGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGT-GCAGATA 522293
Query 24347 GTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACGCTATATCTCACGTAAAGCTG 24406
|||| | |||| | | ||| | || ||| || ||| | || | ||| |
Sbjct 522294 ATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAG 522353
Query 24407 GACTAGGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGAGATTCGTTCAGGTGATG 24466
|| |||| ||||| || | ||||| ||| ||| | || | || || |
Sbjct 522354 GAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAG 522413
Query 24467 CAGTACATACTGGGTTGATTCCTTTTATCGCAGCAACTGCTAAGACCGTTAAAAGCT-GC 24525
|| | ||||| || | ||||||||| | | || | | ||| | ||||| || |
Sbjct 522414 CATTTCATACCGGATGTATTCCTTTT-TATAAACACTTCCAAAGCGCAGTAAAATCTTGT 522472
Query 24526 TCACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACTTCCCATTGTGGCATTTGGAG 24585
|| || ||||| || | || || || ||||||||| | |||| | |||||| | ||
Sbjct 522473 TCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAA 522532
Query 24586 TTTGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGTTTAACCGTGTACGTCAA 24645
|||| || || |||| | |||||||| | ||| | || || | ||||||||
Sbjct 522533 ATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCAT 522592
Query 24646 CTAGACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTTTGGTTGATGGAAAGAAC 24705
|| || ||| | | ||| | || ||| | |||||| | || | ||||| ||
Sbjct 522593 CTTGATTATGCTGTACAAATTAATAAATTAATGTATCAAAGAATGCTACTAGGAAAAAAA 522652
Query 24706 ATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAGCATTCTGTTCTGACCaa 24765
|||||||| ||||||||| ||| |||||| ||||| || || | || || |||
Sbjct 522653 ATTACATTATTTAGTCCTTCTGACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAA 522712
Query 24766 aaagaatttgaaaaactatataaaaaatacgaagctgaccaaagca---tccgtaaaaaa 24822
||| ||||| | || | |||| ||||| ||| | | |||| | | ||||||
Sbjct 522713 AAAAAATTTAAGGAAATTTATATTAAATATGAAA---AAAATAGCAATATAAGAAAAAAA 522769
Query 24823 TCCGTACCTGCTGTTGAAGTATTCAGCACTCTAATGACTGAACGTGCAGAAACTGGTCGT 24882
| ||| |||| | ||| | | ||| ||| | ||| |||||| |||
Sbjct 522770 AGTATTAATGCAATTGATTTGTTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGT 522829
Query 24883 ATCTATATTCAAAATATTGACCATGCAAA--CACTCACTCAACATTTATTGAATCAATTG 24940
|||||||| |||||| | || ||| || ||| | || |||||| | | |||||
Sbjct 522830 ATCTATATACAAAATGTAGATCATTGTAATTCACATAGTC--CATTTAATTC-TAAATTG 522886
Query 24941 -CTCCTATCGAACAATCCAACTTGTGTCAAGAAATCGCACTACCATCTGTGCCATTTGAT 24999
| | || |||||| ||||||||| |||||| || | || | ||| | ||
Sbjct 522887 GCAACAATAAGACAATCTAACTTGTGTTTAGAAATTACATTGCCTACAAAACCACTAAAT 522946
Query 25000 GATATTAATACTGGTGAAGGTTTGATTAGCCTATGTACGTTGAGTGCAATTAA-CTGGGG 25058
||||| || | | || ||| || ||||| | || | || || ||
Sbjct 522947 AATATTGATGATAAAAATGGAGAAATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGT 523006
Query 25059 TAACTTTGATAAACCAGAAGATATGGA--AACTGCATGTGATCTTTCTGTTCGTGCTCTT 25116
| | || |||| | | ||| | | || | || | || ||||| || ||| |
Sbjct 523007 TTAATTA-ATAATTTAAATGATCTCAAGGAATT--ATCTATACTATCTGTACGCGCTTTA 523063
Query 25117 GATTCACTATTGGACTATCAAGACTACCCAGTAGTTCATGCGGACCGAGCAACAAAAA-- 25174
||| | |||| || |||||| |||| |||||| | ||| | ||| ||||
Sbjct 523064 GATGAAATATTAGAATATCAAAACTATCCAGTATT--ATGTG-------CAAAAAAATCT 523114
Query 25175 --TGTATC-----GTCCACTAGGTGTTGGTATTATTAACTTTGCATACTTCCTTGCTAAA 25227
||| || || | |||| ||||| | ||||| |||||||| | | ||||||
Sbjct 523115 GCTGTTTCAAGACGTTCTTTAGGAATTGGTGTAATTAATTTTGCATATTATTTAGCTAAA 523174
Query 25228 CGTGGTTTACGTTATAATGAAGCAGCACTGGAAACAGTT-AACGAGTGGGC----TGAAG 25282
|||| ||| || | ||| || ||| | || |||| | |||||
Sbjct 523175 AACAAAGTACGCTATTCAGATG--GCAGTGCAAAAAATTTAACGCATAAAACTTTTGAAG 523232
Query 25283 CATGGTCGTACTATCTAATTAAATCTTC-TGTACAGCTTGCTAAAGAGAAAGGTAAGTGT 25341
|| ||| ||| || | ||| |||| ||| | | || ||||| ||||| |||
Sbjct 523233 CAATACAGTATTATTTACTAAAAGCTTCCTGTGAAT-TAGCCAAAGAAAAAGGATCTTGT 523291
Query 25342 GAAGGATTTGAT-AATCTAAAATATGCCAAAGGTATTCTTCCAATTGATACTTATAAATC 25400
| |||| || || |||| ||| ||||| |||||||||||||| ||||||
Sbjct 523292 TTATTATTTAATCAAACTAAT-TATTATTTAGGTAAGCTTCCAATTGATACATATAAAAA 523350
Query 25401 TGACATTGATGAATTAGTAACTAAAGAACTAAAACA---AGATTGGGAATCCTTACGTGA 25457
|| | ||| | || ||| |||| | ||| | ||||| | || ||||| |
Sbjct 523351 AGATGTAGAT---TCGATATGTAATGAACCATTACATTTAAATTGGAATTCATTACGAAA 523407
Query 25458 AGATATCAAAGAATATGGTATTCGTAACGCAACAACAATGGCATTAATGCCAGCAGAAAC 25517
| | || ||| ||||||| | | || | || | || |||||||| |||||||
Sbjct 523408 AAAAATTAAAAAATATGGATTAAGAAATTCCACTTTATCTGCTTTAATGCCTTCAGAAAC 523467
Query 25518 AAGTGCACAAATCAGTAACAGTACTAATGGTATTGAAAAGCCACGTTCTCTTGTAACTAA 25577
| | ||||| ||| |||||||||||||||| ||| | | |||| | ||
Sbjct 523468 TTCTTCTCAAATATCTAATGCTACTAATGGTATTGAACCTCCAAGAGGTTTTGTCAGTAT 523527
Query 25578 GAAACTATCTAAGGATGGTATTCTTAAACAAGTAGTTCCAGAAATCAATAAGTTGAAAAA 25637
||| ||||| ||||| || || |||||| ||||||||| || || |||||| |
Sbjct 523528 AAAAGCTTCTAAAGATGGAATGCTGCGACAAGTGGTTCCAGAATATAAAAAATTGAAATA 523587
Query 25638 CAAATATGATTTACTATGGGATCAGAAAGATAACATTGGTTATCTACAAATCTGTGG-TG 25696
||||||| ||||| |||||| | |||| | || || || || | |||||
Sbjct 523588 TGAATATGAATTACTTTGGGATATACCAAATAATACAGGATACTTAGAACT-TGTGGCAA 523646
Query 25697 TTCTACAAAAATACATTGACCAAAGTATCAGTGTTAATACTAGCTATAACCCAATACACT 25756
|| | || || | ||||| ||| ||| ||||| |||| ||| | |||| || |
Sbjct 523647 TTATGCAGAAGTTTATTGATCAATCTATTTCAGTTAACACTAATTATGATCCAAAACGAT 523706
Query 25757 TCCCTGATGGTAAGTTGCCAATGTCAACTCTTCTAACTGAACTTATGTA-TGCATATAAG 25815
| ||| || | || || | ||| || || | ||| || ||||||||
Sbjct 523707 TTTTAAATGAAAAAATACCTATAAAACAACTTATATATG-ATTTACTTACAGCATATAAA 523765
Query 25816 GTTGGTTTGAAAAATCTTTATTATCATAATACCAATGATGGTTCTGATGA 25865
|||| | |||| |||||||||||| ||||| ||||||| |||| ||
Sbjct 523766 CTTGGAATAAAAACTCTTTATTATCAAAATACTCGTGATGGTGCTGAAGA 523815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1113040353871446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |