Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq129631 172 1e-37 >seq129631 Length=630463 Score = 172 bits (190), Expect = 1e-37 Identities = 1351/2150 (63%), Gaps = 75/2150 (3%) Strand=Plus/Plus Query 23755 ATTTCCGTTTCTGAAATTGAAATCCGTGCACAGCTTCAGTTTTATGAAGGTATAGAAACC 23814 || || |||||| || ||||| | ||| ||| |||| |||||| | |||| |||| Sbjct 521702 ATATCTGTTTCTCAAGTTGAATTACGTTCACGTATTCAATTTTATAACAATATAAAAACT 521761 Query 23815 AGTACTATTCATGATATTCTAATAAAAGCAGCAGCAGAACTTATTTCTGAAGATACGCCG 23874 | ||| ||||| | | || ||||| |||||||| | |||||||||||||| || Sbjct 521762 GTGAATATACATGAGACAATTATTAAAGCTGCAGCAGATTTAATTTCTGAAGATACACCT 521821 Query 23875 AACTATCAATACGTTGCTGGAAGATTATTAAACTATAGTATTCGTAAGCAAGTATATGGA 23934 | |||||||| | || | |||| | | | | | || | || ||| || || Sbjct 521822 GATTATCAATATATGGCAGCAAGACTTGCTATTTTTCATCTTAGGAAAAAAGCTTACGGT 521881 Query 23935 CAGTATGACCCA---ATTAAGTATACTGCTCATCTTCAAGAAATGGTAGATACTAAAATA 23991 || | ||| ||| ||| |||| | ||| | || ||||||| || || | Sbjct 521882 CAATTTGAACCACCTATTCTGTATCAT---CATGTAAAAAAAATGGTCAATTTAGGAAAA 521938 Query 23992 TATGATCCTGAAATT-TTGGAGAAATATACTCTTCAAGAAA---TAGAAGAGCTTGGGCG 24047 ||||| | ||||| || | || ||| || || ||||| ||||| | | | Sbjct 521939 TATGA-CGAAAAATTATTACAAAATTATTCTTTTAAAGAATATGTAGAAATGAATT--CA 521995 Query 24048 TTATATCAAACATAAGCGTGACGACAAATTTACTTATGTTGCTATGCGTCAGTGGGAAGG 24107 || |||| | ||| ||||||| || ||| |||||| || | || | ||||| Sbjct 521996 TT-TATCGATCATTGGCGTGACATGAATTTTTCTTATGCAGCAGTAAAACAATTAGAAGG 522054 Query 24108 AAAGTATCTTTATAAAAACCGAGTCACTAAGAAAATTTATGAAACCCCACAAATGGCATA 24167 ||||||| | | |||| || || ||| |||| ||||||| ||||| | ||| Sbjct 522055 AAAGTATTTATTACAAAATCGTGTTACTGGAGAAATATATGAAAGTGCACAATTTTTATA 522114 Query 24168 TATGACTATTGCAGCAATCATCTTTATGGAGTATGATCGTTCTGTACGTATGTCATATGT 24227 ||| || | ||| | | ||| | || || | | |||||| ||| | Sbjct 522115 TATTTTAATATCTGCATGCTTATTTTCTAAATACGAAAAAAATATTCGTATGAATTATAT 522174 Query 24228 TAAAAAGTTTTATGACGCAGTAAGTAATTTTGACATCAGTCTTCCAACACCTATTATGGC 24287 | | |||||| | ||| | | |||| | || ||| || ||||| |||||| | Sbjct 522175 TCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTC 522234 Query 24288 AGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTAGTACT-GAACGTTGGTGATA 24346 ||| || | || || ||||| |||||||||||||| || | ||| || | |||| Sbjct 522235 AGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGT-GCAGATA 522293 Query 24347 GTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACGCTATATCTCACGTAAAGCTG 24406 |||| | |||| | | ||| | || ||| || ||| | || | ||| | Sbjct 522294 ATTTAAACTCTATTAATGCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCAG 522353 Query 24407 GACTAGGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGAGATTCGTTCAGGTGATG 24466 || |||| ||||| || | ||||| ||| ||| | || | || || | Sbjct 522354 GAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAAG 522413 Query 24467 CAGTACATACTGGGTTGATTCCTTTTATCGCAGCAACTGCTAAGACCGTTAAAAGCT-GC 24525 || | ||||| || | ||||||||| | | || | | ||| | ||||| || | Sbjct 522414 CATTTCATACCGGATGTATTCCTTTT-TATAAACACTTCCAAAGCGCAGTAAAATCTTGT 522472 Query 24526 TCACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACTTCCCATTGTGGCATTTGGAG 24585 || || ||||| || | || || || ||||||||| | |||| | |||||| | || Sbjct 522473 TCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAA 522532 Query 24586 TTTGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGTTTAACCGTGTACGTCAA 24645 |||| || || |||| | |||||||| | ||| | || || | |||||||| Sbjct 522533 ATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCAT 522592 Query 24646 CTAGACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTTTGGTTGATGGAAAGAAC 24705 || || ||| | | ||| | || ||| | |||||| | || | ||||| || Sbjct 522593 CTTGATTATGCTGTACAAATTAATAAATTAATGTATCAAAGAATGCTACTAGGAAAAAAA 522652 Query 24706 ATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAGCATTCTGTTCTGACCaa 24765 |||||||| ||||||||| ||| |||||| ||||| || || | || || ||| Sbjct 522653 ATTACATTATTTAGTCCTTCTGACGTTCCTAACTTATATAAATTTTTTTTCTCCGATCAA 522712 Query 24766 aaagaatttgaaaaactatataaaaaatacgaagctgaccaaagca---tccgtaaaaaa 24822 ||| ||||| | || | |||| ||||| ||| | | |||| | | |||||| Sbjct 522713 AAAAAATTTAAGGAAATTTATATTAAATATGAAA---AAAATAGCAATATAAGAAAAAAA 522769 Query 24823 TCCGTACCTGCTGTTGAAGTATTCAGCACTCTAATGACTGAACGTGCAGAAACTGGTCGT 24882 | ||| |||| | ||| | | ||| ||| | ||| |||||| ||| Sbjct 522770 AGTATTAATGCAATTGATTTGTTCTGTTTAATTATGCGAGAAAGAGCATCAACTGGACGT 522829 Query 24883 ATCTATATTCAAAATATTGACCATGCAAA--CACTCACTCAACATTTATTGAATCAATTG 24940 |||||||| |||||| | || ||| || ||| | || |||||| | | ||||| Sbjct 522830 ATCTATATACAAAATGTAGATCATTGTAATTCACATAGTC--CATTTAATTC-TAAATTG 522886 Query 24941 -CTCCTATCGAACAATCCAACTTGTGTCAAGAAATCGCACTACCATCTGTGCCATTTGAT 24999 | | || |||||| ||||||||| |||||| || | || | ||| | || Sbjct 522887 GCAACAATAAGACAATCTAACTTGTGTTTAGAAATTACATTGCCTACAAAACCACTAAAT 522946 Query 25000 GATATTAATACTGGTGAAGGTTTGATTAGCCTATGTACGTTGAGTGCAATTAA-CTGGGG 25058 ||||| || | | || ||| || ||||| | || | || || || Sbjct 522947 AATATTGATGATAAAAATGGAGAAATTGCACTTTGTACTCTATCAGCTCTCAATCTAGGT 523006 Query 25059 TAACTTTGATAAACCAGAAGATATGGA--AACTGCATGTGATCTTTCTGTTCGTGCTCTT 25116 | | || |||| | | ||| | | || | || | || ||||| || ||| | Sbjct 523007 TTAATTA-ATAATTTAAATGATCTCAAGGAATT--ATCTATACTATCTGTACGCGCTTTA 523063 Query 25117 GATTCACTATTGGACTATCAAGACTACCCAGTAGTTCATGCGGACCGAGCAACAAAAA-- 25174 ||| | |||| || |||||| |||| |||||| | ||| | ||| |||| Sbjct 523064 GATGAAATATTAGAATATCAAAACTATCCAGTATT--ATGTG-------CAAAAAAATCT 523114 Query 25175 --TGTATC-----GTCCACTAGGTGTTGGTATTATTAACTTTGCATACTTCCTTGCTAAA 25227 ||| || || | |||| ||||| | ||||| |||||||| | | |||||| Sbjct 523115 GCTGTTTCAAGACGTTCTTTAGGAATTGGTGTAATTAATTTTGCATATTATTTAGCTAAA 523174 Query 25228 CGTGGTTTACGTTATAATGAAGCAGCACTGGAAACAGTT-AACGAGTGGGC----TGAAG 25282 |||| ||| || | ||| || ||| | || |||| | ||||| Sbjct 523175 AACAAAGTACGCTATTCAGATG--GCAGTGCAAAAAATTTAACGCATAAAACTTTTGAAG 523232 Query 25283 CATGGTCGTACTATCTAATTAAATCTTC-TGTACAGCTTGCTAAAGAGAAAGGTAAGTGT 25341 || ||| ||| || | ||| |||| ||| | | || ||||| ||||| ||| Sbjct 523233 CAATACAGTATTATTTACTAAAAGCTTCCTGTGAAT-TAGCCAAAGAAAAAGGATCTTGT 523291 Query 25342 GAAGGATTTGAT-AATCTAAAATATGCCAAAGGTATTCTTCCAATTGATACTTATAAATC 25400 | |||| || || |||| ||| ||||| |||||||||||||| |||||| Sbjct 523292 TTATTATTTAATCAAACTAAT-TATTATTTAGGTAAGCTTCCAATTGATACATATAAAAA 523350 Query 25401 TGACATTGATGAATTAGTAACTAAAGAACTAAAACA---AGATTGGGAATCCTTACGTGA 25457 || | ||| | || ||| |||| | ||| | ||||| | || ||||| | Sbjct 523351 AGATGTAGAT---TCGATATGTAATGAACCATTACATTTAAATTGGAATTCATTACGAAA 523407 Query 25458 AGATATCAAAGAATATGGTATTCGTAACGCAACAACAATGGCATTAATGCCAGCAGAAAC 25517 | | || ||| ||||||| | | || | || | || |||||||| ||||||| Sbjct 523408 AAAAATTAAAAAATATGGATTAAGAAATTCCACTTTATCTGCTTTAATGCCTTCAGAAAC 523467 Query 25518 AAGTGCACAAATCAGTAACAGTACTAATGGTATTGAAAAGCCACGTTCTCTTGTAACTAA 25577 | | ||||| ||| |||||||||||||||| ||| | | |||| | || Sbjct 523468 TTCTTCTCAAATATCTAATGCTACTAATGGTATTGAACCTCCAAGAGGTTTTGTCAGTAT 523527 Query 25578 GAAACTATCTAAGGATGGTATTCTTAAACAAGTAGTTCCAGAAATCAATAAGTTGAAAAA 25637 ||| ||||| ||||| || || |||||| ||||||||| || || |||||| | Sbjct 523528 AAAAGCTTCTAAAGATGGAATGCTGCGACAAGTGGTTCCAGAATATAAAAAATTGAAATA 523587 Query 25638 CAAATATGATTTACTATGGGATCAGAAAGATAACATTGGTTATCTACAAATCTGTGG-TG 25696 ||||||| ||||| |||||| | |||| | || || || || | ||||| Sbjct 523588 TGAATATGAATTACTTTGGGATATACCAAATAATACAGGATACTTAGAACT-TGTGGCAA 523646 Query 25697 TTCTACAAAAATACATTGACCAAAGTATCAGTGTTAATACTAGCTATAACCCAATACACT 25756 || | || || | ||||| ||| ||| ||||| |||| ||| | |||| || | Sbjct 523647 TTATGCAGAAGTTTATTGATCAATCTATTTCAGTTAACACTAATTATGATCCAAAACGAT 523706 Query 25757 TCCCTGATGGTAAGTTGCCAATGTCAACTCTTCTAACTGAACTTATGTA-TGCATATAAG 25815 | ||| || | || || | ||| || || | ||| || |||||||| Sbjct 523707 TTTTAAATGAAAAAATACCTATAAAACAACTTATATATG-ATTTACTTACAGCATATAAA 523765 Query 25816 GTTGGTTTGAAAAATCTTTATTATCATAATACCAATGATGGTTCTGATGA 25865 |||| | |||| |||||||||||| ||||| ||||||| |||| || Sbjct 523766 CTTGGAATAAAAACTCTTTATTATCAAAATACTCGTGATGGTGCTGAAGA 523815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113040353871446