Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq129631 161 1e-34 seq146710 84.2 2e-11 >seq129631 Length=630463 Score = 161 bits (178), Expect = 1e-34 Identities = 309/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 138608 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138667 ||| || | ||| | || ||| ||||||| | |||||| | | |||||||| | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 138668 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138727 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 138728 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 138787 ||| || || || || | || |||||| || ||||| ||||| ||||| | || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 138788 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 138847 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 138848 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138907 ||| ||||| |||| ||||||| || ||||| || |||| ||| | ||||| ||||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 138908 TG---AAGCGGAAGCCTTATTGATAGACTTCAGCGAATCACCTGC---CTCAATAACAAC 138961 || || | ||| ||| ||||| || | ||| | |||| ||||| | || Sbjct 522325 TGCACTAGTTGTAGC---ATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACAC 522272 Query 138962 GCATGAACTGAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGA 139021 || ||||| || || ||||| || || | || | |||||| || || || | || Sbjct 522271 ACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 522212 Query 139022 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 139054 || | ||| || | ||| | |||||| || Sbjct 522211 TATTTTAAAAGTGGAAATTGCATTATAAAAGCG 522179 >seq146710 Length=16940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 69597 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69655 |||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672 Query 69656 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 69685 | ||||||| ||||| ||| ||||||| Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532582917977520