Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_026607.2 Length=159914 Score E Sequences producing significant alignments: (Bits) Value seq129631 192 6e-44 >seq129631 Length=630463 Score = 192 bits (212), Expect = 6e-44 Identities = 322/466 (69%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311 ||| || | ||| ||||| | | |||| || |||||||| | | ||||| || | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371 | | || || ||||| || || | ||||||| || |||||||| ||||| ||| ||| Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431 ||| || || || || | || || ||||||||||||||||||||||| | || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491 ||| | |||||||| || ||||| | |||| ||||| | || ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 133551 ||||||||| ||| ||||| ||||| || || ||||| | | ||| || | ||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 133552 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 133611 || ||| ||||||||||| || | ||| || |||||| | |||||||| Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266 Query 133612 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 133671 |||||| |||||||| || || | | |||| |||||||||||| || | || || | Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206 Query 133672 TCGAGTAGATACAGCGTCATAAAAGCGAATAATATGAGCCAGACGA 133717 ||| || | || | ||||||||| ||||| | || |||| Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 522160 Score = 114 bits (126), Expect = 1e-20 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 62452 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 62511 |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 130076 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 130135 Query 62512 GAGCTAAGGGGCCGTA 62527 ||||||| ||||| || Sbjct 130136 GAGCTAAAGGGCCATA 130151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510643094035360