Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_026607.2
Length=159914
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 192 6e-44
>seq129631
Length=630463
Score = 192 bits (212), Expect = 6e-44
Identities = 322/466 (69%), Gaps = 0/466 (0%)
Strand=Plus/Minus
Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311
||| || | ||| ||||| | | |||| || |||||||| | | ||||| || | ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371
| | || || ||||| || || | ||||||| || |||||||| ||||| ||| |||
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431
||| || || || || | || || ||||||||||||||||||||||| | || || ||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446
Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491
||| | |||||||| || ||||| | |||| ||||| | || |||
Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386
Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 133551
||||||||| ||| ||||| ||||| || || ||||| | | ||| || | |||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 133552 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 133611
|| ||| ||||||||||| || | ||| || |||||| | ||||||||
Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266
Query 133612 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 133671
|||||| |||||||| || || | | |||| |||||||||||| || | || || |
Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206
Query 133672 TCGAGTAGATACAGCGTCATAAAAGCGAATAATATGAGCCAGACGA 133717
||| || | || | ||||||||| ||||| | || ||||
Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 522160
Score = 114 bits (126), Expect = 1e-20
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 62452 TGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACCACT 62511
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 130076 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 130135
Query 62512 GAGCTAAGGGGCCGTA 62527
||||||| ||||| ||
Sbjct 130136 GAGCTAAAGGGCCATA 130151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510643094035360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |