Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq14 116 5e-21
seq13 104 3e-17
>seq14
Length=755408349
Score = 116 bits (128), Expect = 5e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| ||
Sbjct 35287588 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 35287647
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| ||| | ||||||||||| |||||| || || | || |||||||| || |||
Sbjct 35287648 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAATAGCACGAATATTGTGAACAGA 35287707
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || |||| || | |||||| |||| || ||||| ||
Sbjct 35287708 AACACCAATTCCTCCAGCAGATTTACTTATGACAGCACATTCCTTCAGAGTATCATAGAT 35287767
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||| |||||| ||||| | ||| ||||||||
Sbjct 35287768 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 35287809
Score = 89.7 bits (98), Expect = 7e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 132512553 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 132512612
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || ||||| ||| || || || || ||||
Sbjct 132512613 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 132512671
Query 39735 AGATGCCTTCTAC 39747
||||||| || ||
Sbjct 132512672 AGATGCCCTCCAC 132512684
>seq13
Length=727576108
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||||| || | ||||| | ||| |||| | | ||| |||| ||| ||
Sbjct 79584464 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATTCC 79584523
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| ||| | ||||||||||| || ||||| || | || ||||| || || |||
Sbjct 79584524 ATTGGATGTTCCATTTGTTCCTCGGATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 79584583
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| || || ||||| || ||| ||| | |||||| |||| || ||||| ||
Sbjct 79584584 GACGCCAATCCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 79584643
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| |||||||||||| ||||| | ||| ||||||||
Sbjct 79584644 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 79584685
Score = 89.7 bits (98), Expect = 7e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 164669890 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 164669949
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || ||||| ||| || || || || ||||
Sbjct 164669950 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 164670008
Query 39735 AGATGCCTTCTAC 39747
||||||| || ||
Sbjct 164670009 AGATGCCCTCGAC 164670021
Score = 84.2 bits (92), Expect = 3e-11
Identities = 89/116 (77%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA- 69143
|| |||| |||||||| ||||||||||||||||| || || || |||| | |||| ||
Sbjct 79582992 ATGAATGTGTCTGCCAAGCCCTGAACCCCAATACCAATTGGCCTGTGTCGCATATTAGAC 79583051
Query 69144 --ACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197
||| ||| ||| || ||||||||||| ||||| || ||||| || |||||
Sbjct 79583052 CTCCTTGCAGTTTC---AACCGGATAATAATTCATATCAATTATTTTGTTTAGATT 79583104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685628281787760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |