Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq129631 140 7e-28 >seq129631 Length=630463 Score = 140 bits (154), Expect = 7e-28 Identities = 672/1051 (64%), Gaps = 22/1051 (2%) Strand=Plus/Minus Query 259895 ATTTTTTATATAACTTTTC--AAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCC 259952 || ||| |||||| ||| | ||||| ||||||||| ||| | || || ||||| Sbjct 522742 ATATTTAATATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGTT 522683 Query 259953 AGGGACTTCATTAGGACTAAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATACAA 260012 ||| || ||| ||||||||| |||||||| || ||||| | || | |||||||| Sbjct 522682 AGGAACGTCAGAAGGACTAAATAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 522623 Query 260013 AGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTT 260072 ||| || | ||| | | ||| || || ||||| || | || ||| | ||| | Sbjct 522622 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 522563 Query 260073 GTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACAGT 260132 |||||||| | |||| || || |||| ||| | |||||| | |||| | |||||| Sbjct 522562 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 522503 Query 260133 TGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAACAGTC--TTAGCAGTAGCT 260190 ||| || || || | ||| |||||||| ||||| ||| || | || | ||| | Sbjct 522502 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTT 522443 Query 260191 GCAATGAACGGAATCAGCCCAGTGTGTACTGCATCACCTGAACGAATCTCGGAGTCC--A 260248 || || ||||| || || || | ||| || || | || ||| | | | Sbjct 522442 ATAA--AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATA--GGACTTCCTA 522387 Query 260249 GAGCACGAATGCGGCCCATATTAATACCAAGACCAGCTTTACGTGAAATATAACGTAGAA 260308 ||| ||||| | || ||||| || | || ||| | |||| ||| || || Sbjct 522386 AAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 522327 Query 260309 TAGCG-TGGTTAGAGGAACCAATACTATCCAAGCTGTCACCAACGTTTAGTACTACACAA 260367 | || | ||| || | |||| | || | || || | | || |||||| Sbjct 522326 TTGCACTAGTTGTAGCATT-AATAGAGTTTAAATTATCTGCACATTCAATTAACACACAA 522268 Query 260368 GAGCTAAACTGACGTGTATTTGTACGTAGACCAGCCATAATAGGCGTAGGAAGACTAATG 260427 || ||||| ||||| || ||| | || || | |||||| || || || ||| || Sbjct 522267 GAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATT 522208 Query 260428 TCAAAGTTACTTACTGCATCATAAAACTTTTTAACATATGACATACGAACAGAACGATCA 260487 | ||| | | ||||| |||||| | || ||| |||||||| | || Sbjct 522207 TTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTTTTTTCG 522148 Query 260488 TACTCCATAAAGATGATTGCTGCAATAGTCATATATGCCATTTGTGGAGTTTCATAAATT 260547 || | ||| | | ||| | || |||||| | ||||| | ||||||| ||| Sbjct 522147 TATTTAGAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTTTCATATATT 522088 Query 260548 TTCTTAGTAACGCGATTTTTGTAA-AGGTATTTTCCTTCCCATTGACGCATTGCAACATA 260606 | |||||| ||||||| |||| | || |||||||| |||| | ||| |||| Sbjct 522087 TCTCCAGTAACACGATTTT-GTAATAAATACTTTCCTTCTAATTGTTTTACTGCTGCATA 522029 Query 260607 AGTAAATTTATCGTCACGTTTATGTTTGATATA--ACGTCCAAGCTCTTCTATTTCTTGA 260664 || ||| || |||||| ||| | |||| | | || | ||| | ||||| | Sbjct 522028 AGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTC--ATTTCTACATATTCTTTA 521971 Query 260665 AGAGTATATTTCTC-AAGAATTTCAGGATCATATATTTTGGTATCAACCATTTCTTGAAG 260723 | || ||| || | || ||||| | |||||| || || ||||||| || | Sbjct 521970 AAAGAATAATTTTGTAATAATTTTTCG-TCATATTTTCCTAAATTGACCATTTTTTTTAC 521912 Query 260724 ATGAGCAGTATATT-TAATTGGGTCATACTGCCCATATACTTGCTTACGAATACTATAGT 260782 |||| | || | || ||| ||| | || || || ||| || | || | | | Sbjct 521911 ATGATGA-TACAGAATAGGTGGTTCAAATTGACCGTAAGCTTTTTTCCTAAGATGAAAAA 521853 Query 260783 TTAATAGTCTTCCAGCAACATATTGGTAATTAGGTGTATCTTCTGAAATAAGTTCTGCTG 260842 | |||||| | || | |||||| |||| |||||||||||| ||||| | ||||||| Sbjct 521852 TAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTTCAGAAATTAAATCTGCTG 521793 Query 260843 CTGCTTTAATAAGAATATCATGAATAGTACTAGTTTCAATACCTTCATAAAACTGAAGCT 260902 | |||||||||| | ||||| ||| | ||||| ||| | |||||| |||| Sbjct 521792 CAGCTTTAATAATTGTCTCATGTATATTCACAGTTTTTATATTGTTATAAAATTGAATAC 521733 Query 260903 GTGCTCGGATTTCAATTTCAGAAACTGAAAT 260933 ||| || | ||||| || |||||| || || Sbjct 521732 GTGAACGTAATTCAACTTGAGAAACAGATAT 521702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111702115844432