Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_027364.1
Length=348113
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 140 7e-28
>seq129631
Length=630463
Score = 140 bits (154), Expect = 7e-28
Identities = 672/1051 (64%), Gaps = 22/1051 (2%)
Strand=Plus/Minus
Query 259895 ATTTTTTATATAACTTTTC--AAATTCTTTTTGATCAGAGCAGAATGCTTCATATAGCCC 259952
|| ||| |||||| ||| | ||||| ||||||||| ||| | || || |||||
Sbjct 522742 ATATTTAATATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGTT 522683
Query 259953 AGGGACTTCATTAGGACTAAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATACAA 260012
||| || ||| ||||||||| |||||||| || ||||| | || | ||||||||
Sbjct 522682 AGGAACGTCAGAAGGACTAAATAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 522623
Query 260013 AGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACCTTT 260072
||| || | ||| | | ||| || || ||||| || | || ||| | ||| |
Sbjct 522622 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 522563
Query 260073 GTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAACAGT 260132
|||||||| | |||| || || |||| ||| | |||||| | |||| | ||||||
Sbjct 522562 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 522503
Query 260133 TGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAACAGTC--TTAGCAGTAGCT 260190
||| || || || | ||| |||||||| ||||| ||| || | || | ||| |
Sbjct 522502 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTT 522443
Query 260191 GCAATGAACGGAATCAGCCCAGTGTGTACTGCATCACCTGAACGAATCTCGGAGTCC--A 260248
|| || ||||| || || || | ||| || || | || ||| | | |
Sbjct 522442 ATAA--AAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATA--GGACTTCCTA 522387
Query 260249 GAGCACGAATGCGGCCCATATTAATACCAAGACCAGCTTTACGTGAAATATAACGTAGAA 260308
||| ||||| | || ||||| || | || ||| | |||| ||| || ||
Sbjct 522386 AAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 522327
Query 260309 TAGCG-TGGTTAGAGGAACCAATACTATCCAAGCTGTCACCAACGTTTAGTACTACACAA 260367
| || | ||| || | |||| | || | || || | | || ||||||
Sbjct 522326 TTGCACTAGTTGTAGCATT-AATAGAGTTTAAATTATCTGCACATTCAATTAACACACAA 522268
Query 260368 GAGCTAAACTGACGTGTATTTGTACGTAGACCAGCCATAATAGGCGTAGGAAGACTAATG 260427
|| ||||| ||||| || ||| | || || | |||||| || || || ||| ||
Sbjct 522267 GAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATT 522208
Query 260428 TCAAAGTTACTTACTGCATCATAAAACTTTTTAACATATGACATACGAACAGAACGATCA 260487
| ||| | | ||||| |||||| | || ||| |||||||| | ||
Sbjct 522207 TTAAAAGTGGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGAATATTTTTTTCG 522148
Query 260488 TACTCCATAAAGATGATTGCTGCAATAGTCATATATGCCATTTGTGGAGTTTCATAAATT 260547
|| | ||| | | ||| | || |||||| | ||||| | ||||||| |||
Sbjct 522147 TATTTAGAAAATAAGCATGCAGATATTAAAATATATAAAAATTGTGCACTTTCATATATT 522088
Query 260548 TTCTTAGTAACGCGATTTTTGTAA-AGGTATTTTCCTTCCCATTGACGCATTGCAACATA 260606
| |||||| ||||||| |||| | || |||||||| |||| | ||| ||||
Sbjct 522087 TCTCCAGTAACACGATTTT-GTAATAAATACTTTCCTTCTAATTGTTTTACTGCTGCATA 522029
Query 260607 AGTAAATTTATCGTCACGTTTATGTTTGATATA--ACGTCCAAGCTCTTCTATTTCTTGA 260664
|| ||| || |||||| ||| | |||| | | || | ||| | ||||| |
Sbjct 522028 AGAAAAATTCATGTCACGCCAATGATCGATAAATGAATTC--ATTTCTACATATTCTTTA 521971
Query 260665 AGAGTATATTTCTC-AAGAATTTCAGGATCATATATTTTGGTATCAACCATTTCTTGAAG 260723
| || ||| || | || ||||| | |||||| || || ||||||| || |
Sbjct 521970 AAAGAATAATTTTGTAATAATTTTTCG-TCATATTTTCCTAAATTGACCATTTTTTTTAC 521912
Query 260724 ATGAGCAGTATATT-TAATTGGGTCATACTGCCCATATACTTGCTTACGAATACTATAGT 260782
|||| | || | || ||| ||| | || || || ||| || | || | | |
Sbjct 521911 ATGATGA-TACAGAATAGGTGGTTCAAATTGACCGTAAGCTTTTTTCCTAAGATGAAAAA 521853
Query 260783 TTAATAGTCTTCCAGCAACATATTGGTAATTAGGTGTATCTTCTGAAATAAGTTCTGCTG 260842
| |||||| | || | |||||| |||| |||||||||||| ||||| | |||||||
Sbjct 521852 TAGCAAGTCTTGCTGCCATATATTGATAATCAGGTGTATCTTCAGAAATTAAATCTGCTG 521793
Query 260843 CTGCTTTAATAAGAATATCATGAATAGTACTAGTTTCAATACCTTCATAAAACTGAAGCT 260902
| |||||||||| | ||||| ||| | ||||| ||| | |||||| ||||
Sbjct 521792 CAGCTTTAATAATTGTCTCATGTATATTCACAGTTTTTATATTGTTATAAAATTGAATAC 521733
Query 260903 GTGCTCGGATTTCAATTTCAGAAACTGAAAT 260933
||| || | ||||| || |||||| || ||
Sbjct 521732 GTGAACGTAATTCAACTTGAGAAACAGATAT 521702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1111702115844432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |