Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_027404.1
Length=167785
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 156 5e-33
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 156 bits (172), Expect = 5e-33
Identities = 283/413 (69%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 138869 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138928
||| || | ||| | || ||| ||||||| | |||||| | | |||||||| | ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 138929 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138988
| | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || |
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 138989 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 139048
||| || || || || | || |||||| || || || ||||| || || | || || ||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446
Query 139049 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139108
||| ||||||||||| || ||||| | |||| || | | || | |||
Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386
Query 139109 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139168
|| ||||| |||| ||||||| || ||||| || |||| ||| | ||||| |||||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 139169 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACA 139225
|| || | ||| ||| ||||| || || |||| | ||||| | |||||
Sbjct 522325 TGCACTAGTTGTAGC---ATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACA 522269
Query 139226 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTA 139278
|||||||| || ||||| || || | || | |||||| || || ||||
Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 522216
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 68849 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 68907
|||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672
Query 68908 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 68937
| ||||||| ||||| ||| |||||||
Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535783340686800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |