Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 109 7e-19 seq13 107 2e-18 seq129631 82.4 1e-10 seq11 82.4 1e-10 >seq14 Length=755408349 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 132512568 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 132512627 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| |||||||| || Sbjct 132512628 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCA 132512687 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | | ||| ||||||||| Sbjct 132512688 GGCGAAGGCGACGATGCGCTCGGCGAAG 132512715 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || || || ||||||||||| |||||||| | || ||| | ||| | ||| Sbjct 35287896 CTGTGGCCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGTTG 35287955 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | ||| || | | ||||||||||||| ||| ||| || || | || Sbjct 35287956 GGACATGAGATGGTAAGTTCTGATGGCAGAATCAATGTCATCCTTGTGTATCCCTACTGA 35288015 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 |||| ||| ||||||| ||| || |||||| || | ||| | ||| | || || Sbjct 35288016 AACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTA 35288075 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | |||| || || |||| ||| ||||| || ||||| |||||| Sbjct 35288076 GGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 35288122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | | || ||||| ||| Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | |||||||| | ||||| ||||||||||| || || | ||||| | Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||| || | |||||| || || | |||| | || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 646004035 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| |||||||||||||||||||| || Sbjct 646004034 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 240/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || ||||| || || || |||||||| || | | Sbjct 733682116 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-C 733682058 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || ||||||||||| |||||||| || | Sbjct 733682057 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 733681999 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| || | ||||| || || || || | Sbjct 733681998 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGA 733681939 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | || | ||| || ||| || || | || || | Sbjct 733681938 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 733681879 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| |||||||| || ||||| || || || ||| || |||| ||| ||| Sbjct 733681878 CGACGGCCCGGGCGAGCAGCGTCTTGCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 733681819 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||||||||||| || | || | ||||| | |||||| |||||||| | || Sbjct 733681818 TGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACCACCT 733681759 Query 11898 C 11898 | Sbjct 733681758 C 733681758 >seq13 Length=727576108 Score = 107 bits (118), Expect = 2e-18 Identities = 299/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | || ||| ||||| Sbjct 164669606 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 164669665 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | ||||| | | | ||| |||| | | ||| || || Sbjct 164669666 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 164669724 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | || |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| ||||| ||| |||| | |||| || || || ||||| |||||| || Sbjct 164669785 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 164669844 Query 122610 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 122664 || ||| | | | || | | ||| || | | | |||| ||| || Sbjct 164669845 GACG----CGGGACTCG-TCCAGCTTGCCGCGGAGGATGTCGTAGAGGAGGCAGGCGAAG 164669899 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||| || ||||| || ||||| || || || || |||||| || || |||||| Sbjct 164669900 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 164669959 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | ||| | || |||||||| || || ||||||||||| ||||| Sbjct 164669960 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 164670019 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || | | ||| || |||||| Sbjct 164670020 ACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052 Score = 105 bits (116), Expect = 8e-18 Identities = 196/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | | || ||||| ||| Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 | ||| | |||||||| | ||||| ||||||||||| || |||| ||||| | Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626 || || || || ||||| || | |||||| || || | |||| | || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| ||| || || || || ||| || ||| | | ||| Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 662716233 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| |||||||||||||||||||| || Sbjct 662716232 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 Score = 96.9 bits (106), Expect = 4e-15 Identities = 240/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||| |||||||| ||||| | || ||||| || || || |||||||| || | | Sbjct 715483496 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-C 715483438 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| || ||| | || || || ||||||||||| |||||||| || | Sbjct 715483437 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 715483379 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| || | ||||| || || || || | Sbjct 715483378 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGA 715483319 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | || | ||| || ||| || || | || || | Sbjct 715483318 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 715483259 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| |||||||| || ||||| || || || ||| || |||| ||| ||| Sbjct 715483258 CGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 715483199 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||||||||||| || | || | ||||| | |||||| |||||||| | || Sbjct 715483198 TGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACGACCT 715483139 Query 11898 C 11898 | Sbjct 715483138 C 715483138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||||| || || ||||||||||| |||||||| | || ||| | ||| | || Sbjct 79584772 CTGAGGTCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTG 79584831 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | ||| || | | |||| |||||||| ||| |||||| || | || Sbjct 79584832 GGACATGAGATGGTAAGTTCTGATGGCAGAGTCAATGTCATCCTTGTGGATCCCTACTGA 79584891 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 || | ||| ||||||| ||| || |||| | | | ||| ||||| | || || Sbjct 79584892 AACTCTCATTAACATGTGCTGCGGCCTTTCAACAACAACTCCACCGAGCTTCAGGAGGTA 79584951 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | |||| || || |||| ||| ||||| || ||||| |||||| Sbjct 79584952 AGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 79584998 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 |||||||||||| || || || ||| || || | || ||||| || | ||| Sbjct 79582967 TGAATCAAATGCCATGCCAAGTAACATGAATGTGTCTGCCAAGCCCTGAACCCCAATACC 79583026 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 ||| || |||||||||||||||||| | | ||||| ||||| |||||| |||| | || Sbjct 79583027 AATTGGCCTGTGTCGCATATTAGACCTCCTTGCAGTTTCAACCGGATAATAATTCATATC 79583086 Query 111139 AATGACTCGGTTTAGATT 111156 ||| | | ||||||||| Sbjct 79583087 AATTATTTTGTTTAGATT 79583104 >seq129631 Length=630463 Score = 82.4 bits (90), Expect = 1e-10 Identities = 233/348 (67%), Gaps = 15/348 (4%) Strand=Plus/Minus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||||||||| || ||||| | || ||| | | || | ||||| Sbjct 300271 CTTGACGATCAAAACGACCAGGACGAAGTAAAGCAGGATCTAAAACGTCTGGCCTATTAG 300212 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTA 11561 | || || || | | || || ||||| || || |||||||| || || | Sbjct 300211 TAGCAGCTATTAAAATAACACCT---TCATTACCATTAAATCCATCCATTTCCACAAGCA 300155 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTGCGTTGC 11620 |||||| | |||||||||||| ||||||| || || | ||||||| | ||| Sbjct 300154 TTTGATTTAATGTTTGTTCTCTTTCATCATG-GCCACCACCTAATCCAGCACCTCTTTGA 300096 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTT--GATTTTCGCGGGCGA 11678 || || |||||||| |||||||| || | |||||||||| ||||||| | | Sbjct 300095 CGACCAACTGCATCAATTTCATCAATAAATATAATACATGGTGCAGATTTTCTAGCATG- 300037 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 |||||| | ||| | || || || || || ||||||||||| || ||||| | | Sbjct 300036 -TTCAAACATATCTCTTACTCTAGACGCCCCTACTCCAACAAACATTTCAACAAAATCAG 299978 Query 11739 CGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCT 11785 |||| | || | ||||| || |||| |||||| || || ||| Sbjct 299977 AACCAGA-AATTGTAAAAAATGGAACTTTTGCTTCACCTGCTATCGCT 299931 >seq11 Length=621432051 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| |||||||| | || ||| | ||| | ||| Sbjct 597006017 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGG 597006076 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| |||||| | | |||| ||||| || ||| ||| || || | | Sbjct 597006077 GACATCATGTGGTATGTTTTGACAGCAGACTCAATATCATCCTTGTGTATCCCAACAGAA 597006136 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTT--GAAGAT 112118 |||| ||| ||||| | ||||| |||||| | | ||| | | | || | |||| Sbjct 597006137 ACCCTCATTAACATATGTTGTGGTCTTTCCACAACCTTCCCACCAA--CTTTCAGTAGAT 597006194 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||| || || | ||||||| || | | ||| |||| Sbjct 597006195 AAGACCTCTCAAGCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTC 597006240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626861238446400