Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq14 109 7e-19
seq13 107 2e-18
seq129631 82.4 1e-10
seq11 82.4 1e-10
>seq14
Length=755408349
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| || ||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 132512568 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 132512627
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || |||||||| || || ||||||||||| |||||||| ||
Sbjct 132512628 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACGCA 132512687
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|| || || | | ||| |||||||||
Sbjct 132512688 GGCGAAGGCGACGATGCGCTCGGCGAAG 132512715
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| || || || || ||||||||||| |||||||| | || ||| | ||| | |||
Sbjct 35287896 CTGTGGCCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGTTG 35287955
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| | ||| || | | ||||||||||||| ||| ||| || || | ||
Sbjct 35287956 GGACATGAGATGGTAAGTTCTGATGGCAGAATCAATGTCATCCTTGTGTATCCCTACTGA 35288015
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119
|||| ||| ||||||| ||| || |||||| || | ||| | ||| | || ||
Sbjct 35288016 AACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTA 35288075
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
| | |||| || || |||| ||| ||||| || ||||| ||||||
Sbjct 35288076 GGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 35288122
Score = 96.9 bits (106), Expect = 4e-15
Identities = 194/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || | ||| | ||| ||| | ||| || | | || ||||| |||
Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
| ||| | |||||||| | ||||| ||||||||||| || || | ||||| |
Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626
|| || || || ||||| || | |||||| || || | |||| | ||
Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| || || || || || ||| || ||| | | |||
Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 646004035
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
||||| ||||| | |||||| |||||||||||||||||||| ||
Sbjct 646004034 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988
Score = 96.9 bits (106), Expect = 4e-15
Identities = 240/361 (66%), Gaps = 4/361 (1%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
||||| |||||||| ||||| | || ||||| || || || |||||||| || | |
Sbjct 733682116 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-C 733682058
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| ||| || |||| || ||| | || || || ||||||||||| |||||||| || |
Sbjct 733682057 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 733681999
Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
| || || | ||| | || ||||| || | ||||| || || || || |
Sbjct 733681998 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGA 733681939
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
| || | ||| || || | | || | ||| || ||| || || | || || |
Sbjct 733681938 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 733681879
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
||| ||| |||||||| || ||||| || || || ||| || |||| ||| |||
Sbjct 733681878 CGACGGCCCGGGCGAGCAGCGTCTTGCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 733681819
Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897
|||||||||||| || | || | ||||| | |||||| |||||||| | ||
Sbjct 733681818 TGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACCACCT 733681759
Query 11898 C 11898
|
Sbjct 733681758 C 733681758
>seq13
Length=727576108
Score = 107 bits (118), Expect = 2e-18
Identities = 299/453 (66%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || ||||| |||||||| |||||||||||||| || | || ||| |||||
Sbjct 164669606 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 164669665
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489
|||| || || || | ||||| | | | ||| |||| | | ||| || ||
Sbjct 164669666 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 164669724
Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549
|| | || |||| ||||||| | ||| || |||||| |||| ||| ||
Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784
Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609
||||| ||||| ||| |||| | |||| || || || ||||| |||||| ||
Sbjct 164669785 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 164669844
Query 122610 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 122664
|| ||| | | | || | | ||| || | | | |||| ||| ||
Sbjct 164669845 GACG----CGGGACTCG-TCCAGCTTGCCGCGGAGGATGTCGTAGAGGAGGCAGGCGAAG 164669899
Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724
|| ||| || ||||| || ||||| || || || || |||||| || || ||||||
Sbjct 164669900 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 164669959
Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784
|| || |||||||| | ||| | || |||||||| || || ||||||||||| |||||
Sbjct 164669960 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 164670019
Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817
|| || || || || | | ||| || ||||||
Sbjct 164670020 ACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052
Score = 105 bits (116), Expect = 8e-18
Identities = 196/287 (68%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || | ||| | ||| ||| | ||| || | | || ||||| |||
Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
| ||| | |||||||| | ||||| ||||||||||| || |||| ||||| |
Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC-TG-----CGTTGCTTGCCC 11626
|| || || || ||||| || | |||||| || || | |||| | ||
Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| |||||||| ||||||| ||| || || || || ||| || ||| | | |||
Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 662716233
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
||||| ||||| | |||||| |||||||||||||||||||| ||
Sbjct 662716232 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186
Score = 96.9 bits (106), Expect = 4e-15
Identities = 240/361 (66%), Gaps = 4/361 (1%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
||||| |||||||| ||||| | || ||||| || || || |||||||| || | |
Sbjct 715483496 AAGCCGTCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-C 715483438
Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657
| ||| || |||| || ||| | || || || ||||||||||| |||||||| || |
Sbjct 715483437 AC-CCATTCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGC 715483379
Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
| || || | ||| | || ||||| || | ||||| || || || || |
Sbjct 715483378 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGA 715483319
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
| || | ||| || || | | || | ||| || ||| || || | || || |
Sbjct 715483318 CGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGG 715483259
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
||| ||| |||||||| || ||||| || || || ||| || |||| ||| |||
Sbjct 715483258 CGACGGCCCGGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCCCT 715483199
Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897
|||||||||||| || | || | ||||| | |||||| |||||||| | ||
Sbjct 715483198 TGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACGACCT 715483139
Query 11898 C 11898
|
Sbjct 715483138 C 715483138
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| ||||| || || ||||||||||| |||||||| | || ||| | ||| | ||
Sbjct 79584772 CTGAGGTCTCGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTG 79584831
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| | ||| || | | |||| |||||||| ||| |||||| || | ||
Sbjct 79584832 GGACATGAGATGGTAAGTTCTGATGGCAGAGTCAATGTCATCCTTGTGGATCCCTACTGA 79584891
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119
|| | ||| ||||||| ||| || |||| | | | ||| ||||| | || ||
Sbjct 79584892 AACTCTCATTAACATGTGCTGCGGCCTTTCAACAACAACTCCACCGAGCTTCAGGAGGTA 79584951
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166
| |||| || || |||| ||| ||||| || ||||| ||||||
Sbjct 79584952 AGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 79584998
Score = 82.4 bits (90), Expect = 1e-10
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078
|||||||||||| || || || ||| || || | || ||||| || | |||
Sbjct 79582967 TGAATCAAATGCCATGCCAAGTAACATGAATGTGTCTGCCAAGCCCTGAACCCCAATACC 79583026
Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138
||| || |||||||||||||||||| | | ||||| ||||| |||||| |||| | ||
Sbjct 79583027 AATTGGCCTGTGTCGCATATTAGACCTCCTTGCAGTTTCAACCGGATAATAATTCATATC 79583086
Query 111139 AATGACTCGGTTTAGATT 111156
||| | | |||||||||
Sbjct 79583087 AATTATTTTGTTTAGATT 79583104
>seq129631
Length=630463
Score = 82.4 bits (90), Expect = 1e-10
Identities = 233/348 (67%), Gaps = 15/348 (4%)
Strand=Plus/Minus
Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504
|||| |||||||||||||| || ||||| | || ||| | | || | |||||
Sbjct 300271 CTTGACGATCAAAACGACCAGGACGAAGTAAAGCAGGATCTAAAACGTCTGGCCTATTAG 300212
Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTA 11561
| || || || | | || || ||||| || || |||||||| || || |
Sbjct 300211 TAGCAGCTATTAAAATAACACCT---TCATTACCATTAAATCCATCCATTTCCACAAGCA 300155
Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTGCGTTGC 11620
|||||| | |||||||||||| ||||||| || || | ||||||| | |||
Sbjct 300154 TTTGATTTAATGTTTGTTCTCTTTCATCATG-GCCACCACCTAATCCAGCACCTCTTTGA 300096
Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTT--GATTTTCGCGGGCGA 11678
|| || |||||||| |||||||| || | |||||||||| ||||||| | |
Sbjct 300095 CGACCAACTGCATCAATTTCATCAATAAATATAATACATGGTGCAGATTTTCTAGCATG- 300037
Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738
|||||| | ||| | || || || || || ||||||||||| || ||||| | |
Sbjct 300036 -TTCAAACATATCTCTTACTCTAGACGCCCCTACTCCAACAAACATTTCAACAAAATCAG 299978
Query 11739 CGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCT 11785
|||| | || | ||||| || |||| |||||| || || |||
Sbjct 299977 AACCAGA-AATTGTAAAAAATGGAACTTTTGCTTCACCTGCTATCGCT 299931
>seq11
Length=621432051
Score = 82.4 bits (90), Expect = 1e-10
Identities = 155/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||| || ||||||||||| |||||||| | || ||| | ||| | |||
Sbjct 597006017 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGG 597006076
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| ||| |||||| | | |||| ||||| || ||| ||| || || | |
Sbjct 597006077 GACATCATGTGGTATGTTTTGACAGCAGACTCAATATCATCCTTGTGTATCCCAACAGAA 597006136
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTT--GAAGAT 112118
|||| ||| ||||| | ||||| |||||| | | ||| | | | || | ||||
Sbjct 597006137 ACCCTCATTAACATATGTTGTGGTCTTTCCACAACCTTCCCACCAA--CTTTCAGTAGAT 597006194
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164
| | ||||||| || || | ||||||| || | | ||| ||||
Sbjct 597006195 AAGACCTCTCAAGCGTCTTAAAACCAAAGAAATCGTAGTCAAAGTC 597006240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626861238446400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |