Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14 170 2e-37 seq13 159 4e-34 >seq14 Length=755408349 Score = 170 bits (188), Expect = 2e-37 Identities = 317/453 (70%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 132512269 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 132512328 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | | ||| | | | || ||| ||| | |||| || || Sbjct 132512329 CAGTCGAACGGGTTGGTGGCGTTGTATAGCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 132512387 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| |||| ||| |||||| |||| ||| || Sbjct 132512388 GTCGGCGACGAACTCGATGTACTGGCTCATCAGGTCGCCGTTCATGCCGACGAGCGCGCA 132512447 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| ||| |||| || |||| |||||||| || || ||||| || Sbjct 132512448 GGGCAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGAGACGATCTCGAA 132512507 Query 129967 AATG-GTCTC-CGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 130021 | | || | ||| |||| | | ||||| | ||| | || ||| || ||| || Sbjct 132512508 GACGCGTGACTCGT-CCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAAG 132512562 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 132512563 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 132512622 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || || || || ||||| ||||||||||| |||||| Sbjct 132512623 AGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCC 132512682 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 132512683 ACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 132512715 Score = 123 bits (136), Expect = 3e-23 Identities = 359/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 111022653 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 111022712 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004 | ||| || | || | || || ||| || ||| |||||||| | | || Sbjct 111022713 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT-TGGCGCT 111022771 Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064 ||| || | | |||| |||||| |||||||| ||| || ||||| | || || Sbjct 111022772 GTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCCACGGACACCTGCCG 111022831 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 || ||||| || |||||||| || ||| |||| ||||| || |||||||| || || Sbjct 111022832 GTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGC 111022891 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 |||||| | || ||| | ||| || || |||||||| || | || || || | Sbjct 111022892 GATGACGATGACGCCGCTGTCGCCGCGGAAACCGTCCATCTCGGTGAGCAGCTGGTTCAG 111022951 Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || || ||||| || || || | | || | ||||| | ||| ||| ||||||| Sbjct 111022952 CGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGAT-ACCCGTGCCGCGCTGCCGGCCGACGG 111023010 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 |||| || || |||||||| || | || || | || ||| | |||| | Sbjct 111023011 CGTCGATCTCGTCGATGAACACCAGGCACGGCGCGCTGTCCTTGGCCTTGTTGAAGAGGT 111023070 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | ||||| | | || || || ||||| |||||||| | || | | |||| || Sbjct 111023071 CCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CAGC 111023129 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || |||||| ||| | || |||||||| || ||| || || |||||||||||| Sbjct 111023130 GAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTC 111023189 Query 14423 CCTGG 14427 || || Sbjct 111023190 CCCGG 111023194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || |||||||| || ||||| || || || || ||| || | ||| Sbjct 733682218 ACGGTGACCTGCCGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 733682159 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 733682158 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 733682101 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACT 14226 | | || || || ||||| || || | ||||| ||| | || ||| || |||| Sbjct 733682100 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACC 733682043 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 || ||| | |||||||||||||| ||||||||||| ||||| || || || | Sbjct 733682042 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 733681983 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| || | ||| || || ||||| || || || | ||| || || Sbjct 733681982 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAA 733681923 Query 14347 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | |||| || || |||||| || | || || |||| ||| |||||||| Sbjct 733681922 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 733681863 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 14465 || ||||| || ||||| || || |||| | |||| | | | |||||| |||| | Sbjct 733681862 CAGCGTCTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 733681804 Query 14466 C 14466 | Sbjct 733681803 C 733681803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTTACCGACG 14242 || || || | |||||| ||| || ||| ||| | | | |||| | || || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCTTTGCCTCCCAACA 646004092 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300 || ||||||||||| | || || || || || ||| || ||| |||| |||| Sbjct 646004091 GCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGAAGA 646004034 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || || | |||||| ||||| |||||||||||||| || Sbjct 646004033 GATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 >seq13 Length=727576108 Score = 159 bits (176), Expect = 4e-34 Identities = 315/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 164669606 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 164669665 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | | ||| | | | || ||| ||| | |||| || || Sbjct 164669666 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTCTTGCAGCCCAG-CGCCATGAGCAGGCG 164669724 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| || Sbjct 164669725 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 164669784 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| ||| |||| || |||| |||||||| || || |||||| || Sbjct 164669785 GGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGGACACGATCTCGAA 164669844 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| || |||| | | ||| | | ||| | || ||| || ||| || Sbjct 164669845 GACGCGGGACTC-GT-CCAGCT-TGCCGCGGAGGATGTCGTAGAGGAGG--CA-GGCGAA 164669898 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 164669899 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 164669958 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 164669959 GAGCCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 164670018 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 164670019 GACGCAGGCGAAGGCGACGATGCGCTCCGCGAAG 164670052 Score = 105 bits (116), Expect = 8e-18 Identities = 355/545 (65%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 142204284 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 142204225 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004 | ||| || | || | || || ||| || ||| |||||||| | | || Sbjct 142204224 GGCGTGCGCATGGCCACCACGCCGAGGGACACGCCGGGGTCCAGCTTCTTGT-TGGCGCT 142204166 Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064 ||| || | | |||| |||||| |||||||| || || ||||| | || || Sbjct 142204165 GTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCCGGCAGCCCCACGGACACCTGCCG 142204106 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 || ||||| || |||||||| || || |||| ||||| || |||||||| || || Sbjct 142204105 GTCGAAGCGGCCCGGGCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGC 142204046 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 |||||| | || ||| | ||| ||||| |||||||| || | || || || | Sbjct 142204045 GATGACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTCAG 142203986 Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || || ||||| || || || | | || | |||| | ||| ||| ||||||| Sbjct 142203985 CGTCTGCTCGCGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGACGG 142203927 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 |||| || || |||||||| || | || || || || ||| | || | | Sbjct 142203926 CGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGGT 142203867 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | ||||| | | || || || ||||| |||||||| | || | | ||| ||| Sbjct 142203866 CCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGG-ACAGC 142203808 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || ||| || ||| | || |||||||| || ||| || || ||||||||||| Sbjct 142203807 GAGAAGAACGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGTAGCGTCTTCCCCGTT 142203748 Query 14423 CCTGG 14427 || || Sbjct 142203747 CCCGG 142203743 Score = 102 bits (112), Expect = 1e-16 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || |||||||| || ||||| || || || || ||| || | ||| Sbjct 715483598 ACGGTGACCTGCCGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGC 715483539 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 14168 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 715483538 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 715483481 Query 14169 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACT 14226 | | || || || ||||| || || | ||||| ||| | || ||| || |||| Sbjct 715483480 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACC 715483423 Query 14227 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACG 14286 || ||| | |||||||||||||| ||||||||||| ||||| || || || | Sbjct 715483422 ACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTT 715483363 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || |||| || | ||| || || ||||| || || || | ||| || || Sbjct 715483362 GGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAA 715483303 Query 14347 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | |||| || || |||||| || | || || |||| ||| |||||||| Sbjct 715483302 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAG 715483243 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 14465 || |||||||| ||||| || || |||| | |||| | | | |||||| |||| | Sbjct 715483242 CAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCC 715483184 Query 14466 C 14466 | Sbjct 715483183 C 715483183 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | ||| || | ||| ||| | ||| || || || Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 | |||| |||||| || | | ||||| |||||||||||||||| || ||||||| Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTTACCGACG 14242 || || || | |||||| ||| || ||| ||| | | | |||| | || || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCCA---CCACCGATACCTGTTCCTCTTTGCCTCCCAACT 662716290 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300 || ||||||||||| | ||| || || || || ||| || ||| |||| |||| Sbjct 662716289 GCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTCCTTGGC--CTTCTTGAAGA 662716232 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| || || | |||||| ||||| |||||||||||||| || Sbjct 662716231 GATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617282328561040