Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq14 141 1e-28
seq13 141 1e-28
>seq14
Length=755408349
Score = 141 bits (156), Expect = 1e-28
Identities = 120/148 (81%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| || |||| || || || || ||||| ||||||||||| || |||||
Sbjct 132512715 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTT 132512656
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 132512655 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 132512596
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| || |||
Sbjct 132512595 GCTCATCTCCCGCGACGAGGGCCTGCAC 132512568
Score = 107 bits (118), Expect = 2e-18
Identities = 200/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| |||| || || || | ||||||||||||||||| |||| ||| || || | |
Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700
|| || |||| |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758
|| |||||||| ||||||| || || ||||| || ||| || | | | |||| |
Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 646004037
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 646004036 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 733682206 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 733682147
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 733682146 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 733682089
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 733682088 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 733682031
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 733682030 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 733681975
Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| ||||| |||| ||| || | ||||| || || || || | ||| || || | |
Sbjct 733681974 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 733681917
Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 733681916 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 733681857
Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 733681856 CTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 733681803
>seq13
Length=727576108
Score = 141 bits (156), Expect = 1e-28
Identities = 120/148 (81%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| || |||| || || || || ||||| ||||||||||| || |||||
Sbjct 164670052 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 164669993
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 164669992 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 164669933
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| || |||
Sbjct 164669932 GCTCATCTCCCGCGACGAGGGCCTGCAC 164669905
Score = 107 bits (118), Expect = 2e-18
Identities = 200/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|||||||| || || | ||| | ||| ||| | ||| ||| | | || || || ||
Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407
Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646
| |||| || || || | ||||||||||||||||| |||| || || || | |
Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347
Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700
|| || |||| |||||| ||| | |||||| | ||| | |||| | ||
Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758
|| |||||||| ||||||| ||| || ||||| || ||| || | | | |||| |
Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 662716235
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||||||| || ||||| ||| || |||||||||||||||||||| ||
Sbjct 662716234 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186
Score = 96.9 bits (106), Expect = 4e-15
Identities = 277/415 (67%), Gaps = 22/415 (5%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|||||||| || ||||| || || ||||| || || | ||| | || ||||||
Sbjct 715483586 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 715483527
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| || | | ||| |||||| | || || |||||||| || | || ||||
Sbjct 715483526 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 715483469
Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699
|||| || || |||| ||||| ||| | || ||| || |||| || ||| | ||
Sbjct 715483468 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 715483411
Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755
||||| ||||||||||| |||||||||||||| || ||| || || | |
Sbjct 715483410 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 715483355
Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| ||||| |||| ||| || | ||||| || || || || | ||| || || | |
Sbjct 715483354 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 715483297
Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873
|||| || || |||||| || | || || || | ||| |||||||| || ||
Sbjct 715483296 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 715483237
Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
||| || || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 715483236 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 715483183
Score = 82.4 bits (90), Expect = 9e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187
||||| |||||| || || ||||||| | | ||||||| |||| ||| || |||
Sbjct 79583125 GTTACTTCAACTGTTACTTTCAATCTAAACAAAATAATTGATATGAATTATTATCCGGTT 79583066
Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247
|| ||||| | | ||||||||| ||||| | ||||||||| | || |||||||| |
Sbjct 79583065 GAAACTGCAAGGAGGTCTAATATGCGACACAGGCCAATTGGTATTGGGGTTCAGGGCTTG 79583006
Query 105248 GCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 105285
|| || |||||| | | || |||||||||||
Sbjct 79583005 GCAGACACATTCATGTTACTTGGCATGGCATTTGATTC 79582968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582173499798160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |