Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14 141 1e-28 seq13 141 1e-28 >seq14 Length=755408349 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 132512715 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTT 132512656 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 132512655 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 132512596 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 132512595 GCTCATCTCCCGCGACGAGGGCCTGCAC 132512568 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 646004268 TCAAAGCGTCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 646004209 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| ||| || || | | Sbjct 646004208 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGAAGCTGATTGAGA 646004149 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 646004148 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 646004095 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 646004094 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 646004037 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 646004036 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 646003988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 733682206 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 733682147 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 733682146 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 733682089 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 733682088 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 733682031 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 733682030 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 733681975 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 733681974 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 733681917 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 733681916 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 733681857 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 733681856 CTTGCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 733681803 >seq13 Length=727576108 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 164670052 CTTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 164669993 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 164669992 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 164669933 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 164669932 GCTCATCTCCCGCGACGAGGGCCTGCAC 164669905 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | | || || || || Sbjct 662716466 TCAAAGCGCCCAGGTCTAAGCAAAGCGGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 662716407 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 662716406 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 662716347 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 9700 || || |||| |||||| ||| | |||||| | ||| | |||| | || Sbjct 662716346 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCCCA 662716293 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 9758 || |||||||| ||||||| ||| || ||||| || ||| || | | | |||| | Sbjct 662716292 ACTGCATCAATTTCATCAACGAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 662716235 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||||| || ||||| ||| || |||||||||||||||||||| || Sbjct 662716234 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 662716186 Score = 96.9 bits (106), Expect = 4e-15 Identities = 277/415 (67%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| || || ||||| || || | ||| | || |||||| Sbjct 715483586 CGATCAAACCGCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 715483527 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 715483526 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 715483469 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 715483468 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCGGCACCACGCTGCCTCCC 715483411 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 ||||| ||||||||||| |||||||||||||| || ||| || || | | Sbjct 715483410 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 715483355 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | ||||| |||| ||| || | ||||| || || || || | ||| || || | | Sbjct 715483354 CGAAGAGGTCCC--TCACCCTGGACGCGCCGACGCCGACGAAGAGCTCGACGAACTCAGA 715483297 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| || || |||||| || | || || || | ||| |||||||| || || Sbjct 715483296 CGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCGGGCGAGCAGCGT 715483237 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| || || || ||| || |||| | |||| | | | || |||||||| || Sbjct 715483236 CTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 715483183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187 ||||| |||||| || || ||||||| | | ||||||| |||| ||| || ||| Sbjct 79583125 GTTACTTCAACTGTTACTTTCAATCTAAACAAAATAATTGATATGAATTATTATCCGGTT 79583066 Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247 || ||||| | | ||||||||| ||||| | ||||||||| | || |||||||| | Sbjct 79583065 GAAACTGCAAGGAGGTCTAATATGCGACACAGGCCAATTGGTATTGGGGTTCAGGGCTTG 79583006 Query 105248 GCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 105285 || || |||||| | | || ||||||||||| Sbjct 79583005 GCAGACACATTCATGTTACTTGGCATGGCATTTGATTC 79582968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582173499798160