Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq12 84.2 1e-11 seq2 82.4 4e-11 seq1 82.4 4e-11 >seq12 Length=703217322 Score = 84.2 bits (92), Expect = 1e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 65119 ATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCAT-TTAAAC 65177 ||||||||| || |||| ||||| |||||||||||| | ||||| ||| | || || Sbjct 515521183 ATTAATATTATTGCTGCCAACAAAATCCTGAGCCATTCCTACAATTG-TGCTTGCTAGAC 515521241 Query 65178 TCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAAC 65235 || |||||||| || ||| |||| ||||| || ||||| ||| ||||||| || || Sbjct 515521242 TCTGCTCACCGTGGTGGTATGCTGAGTGTTCTGACACATAGCCAATAAATTGTGCCAC 515521299 >seq2 Length=690537804 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 482341214 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 482341155 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 482341154 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 482341096 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 482341095 TGACACATAACCAATAAACTGTGCCAC 482341069 >seq1 Length=593586810 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149 || |||||||| ||| ||| || | ||| ||||| || |||| ||||| |||| Sbjct 456757718 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 456757659 Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208 |||||||| ||||||| ||| | || |||| ||||| || || ||| |||| ||||| Sbjct 456757658 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 456757600 Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235 || ||||| ||| |||| || || || Sbjct 456757599 TGACACATAACCAATAAACTGTGCCAC 456757573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235251634955100