Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028104.1
Length=73689
Score E
Sequences producing significant alignments: (Bits) Value
seq12 84.2 1e-11
seq2 82.4 4e-11
seq1 82.4 4e-11
>seq12
Length=703217322
Score = 84.2 bits (92), Expect = 1e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 65119 ATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCAT-TTAAAC 65177
||||||||| || |||| ||||| |||||||||||| | ||||| ||| | || ||
Sbjct 515521183 ATTAATATTATTGCTGCCAACAAAATCCTGAGCCATTCCTACAATTG-TGCTTGCTAGAC 515521241
Query 65178 TCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAAC 65235
|| |||||||| || ||| |||| ||||| || ||||| ||| ||||||| || ||
Sbjct 515521242 TCTGCTCACCGTGGTGGTATGCTGAGTGTTCTGACACATAGCCAATAAATTGTGCCAC 515521299
>seq2
Length=690537804
Score = 82.4 bits (90), Expect = 4e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149
|| |||||||| ||| ||| || | ||| ||||| || |||| ||||| ||||
Sbjct 482341214 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 482341155
Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208
|||||||| ||||||| ||| | || |||| ||||| || || ||| |||| |||||
Sbjct 482341154 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 482341096
Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235
|| ||||| ||| |||| || || ||
Sbjct 482341095 TGACACATAACCAATAAACTGTGCCAC 482341069
>seq1
Length=593586810
Score = 82.4 bits (90), Expect = 4e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 65090 GTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGA 65149
|| |||||||| ||| ||| || | ||| ||||| || |||| ||||| ||||
Sbjct 456757718 GTACCAAACTGGCCACGGGGCTCCAAAAGATTGATATTATTGCTGCCAACAAAATCCTGA 456757659
Query 65150 GCCATTCCGATAATTGCTGCAT-TTAAACTCGCTTCACCGTGATGATATCCTGAATGTTC 65208
|||||||| ||||||| ||| | || |||| ||||| || || ||| |||| |||||
Sbjct 456757658 GCCATTCCTATAATTG-TGCTTGCTAGACTCTGCTCACCATGGTGGTATGCTGAGTGTTC 456757600
Query 65209 AGAGACATATCCACTAAATTGAGCAAC 65235
|| ||||| ||| |||| || || ||
Sbjct 456757599 TGACACATAACCAATAAACTGTGCCAC 456757573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 235251634955100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |