Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq13 219 5e-52 seq14 215 6e-51 >seq13 Length=727576108 Score = 219 bits (242), Expect = 5e-52 Identities = 588/875 (67%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 164670465 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 164670406 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| | ||| || Sbjct 164670405 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAAC 164670346 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 164670345 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTG 164670286 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 164670285 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 164670229 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 164670228 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 164670170 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 164670169 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 164670110 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || ||||| | | ||||| || | | ||||| Sbjct 164670109 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGGGAGCGC-- 164670052 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 164670051 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 164669992 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 164669991 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 164669932 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 164669931 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 164669874 Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 | || || || | ||| | | || | |||| || || | || | || || Sbjct 164669873 TCCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTGTCCGAGGCCGTG-GAC 164669818 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 164669817 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 164669758 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323 |||| |||||||| |||| ||||| |||||| |||||||| | | | || Sbjct 164669757 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAA 164669699 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | | | ||| || | ||||| ||||||||||||||| ||||||| || | || Sbjct 164669698 GAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 164669641 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 164669640 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 164669606 >seq14 Length=755408349 Score = 215 bits (238), Expect = 6e-51 Identities = 586/874 (67%), Gaps = 31/874 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || |||| |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 132513128 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 132513069 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 ||| ||||||| | |||||| || ||| | | ||||||| |||| || Sbjct 132513068 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCTCTCCAAC 132513009 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 132513008 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTG 132512949 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | ||||||||| || | Sbjct 132512948 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 132512892 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| |||||| || | || Sbjct 132512891 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 132512833 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 132512832 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 132512773 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 ||||| || | || || || |||||| ||| ||||| || | ||||| Sbjct 132512772 ACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTGCGCTGGATCGACGGTGGGGAGCGC-- 132512715 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | || || || |||||||| || ||||||||||| ||||| ||| Sbjct 132512714 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTTC 132512655 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 132512654 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 132512595 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150 || || ||||| ||||||||||| || || || || || | ||||| ||| || Sbjct 132512594 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 132512537 Query 60151 T-ATTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207 | || || | | | || | | || | |||| || || | || | || || Sbjct 132512536 TGCGCGGCAAGCTGGACGAGTCACGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GACA 132512480 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||||| |||||| || || ||||| || ||| ||| | || ||| ||| | Sbjct 132512479 TCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACC 132512420 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAG 60324 |||| |||||||| |||| ||||| |||||| |||||||| | | | ||| Sbjct 132512419 TGATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAAG 132512361 Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384 | | | ||| || | ||||| ||||||||||||||| |||||| || | || | Sbjct 132512360 AAGC--TATACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 132512303 Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||| |||||||| || || || || Sbjct 132512302 AGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 132512269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547502253780960