Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq13 219 5e-52
seq14 215 6e-51
>seq13
Length=727576108
Score = 219 bits (242), Expect = 5e-52
Identities = 588/875 (67%), Gaps = 33/875 (4%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || |||| |||| | | |||| | || ||||| ||| | | || ||||||
Sbjct 164670465 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 164670406
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678
||| ||||||| | |||||| || ||| | | ||||||| | ||| ||
Sbjct 164670405 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACGACGCTCTCCAAC 164670346
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
||||||| || |||||| || || ||||||||||| || || || || |||
Sbjct 164670345 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTG 164670286
Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
| || || | | | | | | | ||| || || ||| | ||||||||| || |
Sbjct 164670285 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 164670229
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | ||| ||| || |||| ||||||||||||| |||||| || | ||
Sbjct 164670228 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 164670170
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914
||| | | || || | ||||||| | || ||||| ||||| || ||
Sbjct 164670169 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 164670110
Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972
|||||| || | || || || ||||| | | ||||| || | | |||||
Sbjct 164670109 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGGGAGCGC-- 164670052
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || | || || | || || || ||||| || || ||||||||||| ||||| |||
Sbjct 164670051 TTCGCGGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 164669992
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|| || || ||||||||||| ||||| || |||||||||||||| | ||||||||||||
Sbjct 164669991 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 164669932
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150
|| || ||||| ||||||||||| || || || || || | ||||| ||| ||
Sbjct 164669931 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 164669874
Query 60151 T-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206
| || || || | ||| | | || | |||| || || | || | || ||
Sbjct 164669873 TCCGCGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCGTGTCCGAGGCCGTG-GAC 164669818
Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266
| ||||| |||||| || || ||||| || ||| ||| | || ||| ||| |
Sbjct 164669817 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGAC 164669758
Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAA 60323
|||| |||||||| |||| ||||| |||||| |||||||| | | | ||
Sbjct 164669757 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAA 164669699
Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383
| | | | ||| || | ||||| ||||||||||||||| ||||||| || | ||
Sbjct 164669698 GAAGC--TGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 164669641
Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||||||||||| |||||||| ||||| || ||
Sbjct 164669640 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 164669606
>seq14
Length=755408349
Score = 215 bits (238), Expect = 6e-51
Identities = 586/874 (67%), Gaps = 31/874 (4%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || |||| |||| | | |||| | || ||||| ||| | | || ||||||
Sbjct 132513128 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 132513069
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678
||| ||||||| | |||||| || ||| | | ||||||| |||| ||
Sbjct 132513068 ACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCTCTCCAAC 132513009
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
||||||| || |||||| || || ||||||||||| || || || || |||
Sbjct 132513008 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTG 132512949
Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
| || || | | | | | | | ||| || || ||| | ||||||||| || |
Sbjct 132512948 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCCAGGGCC 132512892
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | ||| ||| || |||| ||||||||||||| |||||| || | ||
Sbjct 132512891 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCAT 132512833
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914
||| | | || || | ||||||| | || ||||| ||||| || ||
Sbjct 132512832 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCAT 132512773
Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972
||||| || | || || || |||||| ||| ||||| || | |||||
Sbjct 132512772 ACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTGCGCTGGATCGACGGTGGGGAGCGC-- 132512715
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
|| || | || || | || || || |||||||| || ||||||||||| ||||| |||
Sbjct 132512714 TTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGGAGGGCATCTTCTTCTCGGGCTCCTTC 132512655
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|| || || ||||||||||| ||||| || |||||||||||||| | ||||||||||||
Sbjct 132512654 TGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 132512595
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA-CC 60150
|| || ||||| ||||||||||| || || || || || | ||||| ||| ||
Sbjct 132512594 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTA-CGACATCC 132512537
Query 60151 T-ATTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207
| || || | | | || | | || | |||| || || | || | || ||
Sbjct 132512536 TGCGCGGCAAGCTGGACGAGTCACGCGTCTT--CGAGATCGTCTCCGAGGCCGTG-GACA 132512480
Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267
| ||||| |||||| || || ||||| || ||| ||| | || ||| ||| |
Sbjct 132512479 TCGAGAGGGAGTTCGTCTGCGACGCGCTGCCCTGCGCGCTCGTCGGCATGAACGGCGACC 132512420
Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAG 60324
|||| |||||||| |||| ||||| |||||| |||||||| | | | |||
Sbjct 132512419 TGATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTG-CAAG 132512361
Query 60325 GACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGA 60384
| | | ||| || | ||||| ||||||||||||||| |||||| || | || |
Sbjct 132512360 AAGC--TATACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 132512303
Query 60385 AGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||||||||||||| |||||||| || || || ||
Sbjct 132512302 AGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 132512269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547502253780960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |