Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028448.1
Length=167467
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 170 2e-37
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 170 bits (188), Expect = 2e-37
Identities = 306/447 (68%), Gaps = 0/447 (0%)
Strand=Plus/Minus
Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552
||| || | ||| | || ||| ||||||| | |||||| | | |||||||| | ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612
| | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || |
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672
||| || || || || | || |||||| || ||||| ||||| ||||| | || || ||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446
Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732
||| ||||||||||| || ||||| | |||| || | | || | |||
Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386
Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792
||| ||||| ||| ||||||| || ||||| || |||| ||||| ||||| |||||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 81793 TGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGA 81852
|| | || | |||||| || || || ||| || |||||| | || || ||
Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266
Query 81853 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 81912
|||||| || ||||| || || | || | |||||| || || || | || || |
Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206
Query 81913 TCGAGTAGATACTGCTTCATAAAAACG 81939
||| || | ||| | |||||| ||
Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCG 522179
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 12836 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 12894
|||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672
Query 12895 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 12924
| ||||||| ||||| ||| |||||||
Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534767637671280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |