Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq129631 253 2e-62 >seq129631 Length=630463 Score = 253 bits (280), Expect = 2e-62 Identities = 882/1359 (65%), Gaps = 62/1359 (5%) Strand=Plus/Minus Query 136590 CCGTCTTTAGAAGCTTTTGCCGTCACAGATTTTCTTGGTGGCTCAATACCATTTGTGCTA 136649 || ||||||||||||||| | ||| | |||||| || ||||||||||| || | Sbjct 523545 CCATCTTTAGAAGCTTTTATACTGACAAAACCTCTTGGAGGTTCAATACCATTAGTAGCA 523486 Query 136650 TTAGAAACTTGAGAAGATGATTCACAAGGCATTAATGCAGATAAAGTACTGTTTCTGATA 136709 ||||| | ||||||||| | ||| |||||||||| ||||||||||| ||||| | Sbjct 523485 TTAGATATTTGAGAAGAAGTTTCTGAAGGCATTAAAGCAGATAAAGTGGAATTTCTTAAT 523426 Query 136710 CCGTATTGCTTAAGGTCTTTACGTAAAGATTCCCAATCACAAACATATTCTGGTTTA--A 136767 || |||| |||| | ||| ||||| || | ||||| || | | ||||| | | Sbjct 523425 CCATATTTTTTAATTTTTTTTCGTAATGAATTCCAATTTAAA---TGTAATGGTTCATTA 523369 Query 136768 C-TACTTTATCAAGGTTTTTATTATACCAATCAATGGGTAATAAGCCTTGAGAATATTTA 136826 | || ||| | | ||| ||||| |||||| || | ||| | |||| ||| Sbjct 523368 CATATCGAATCTACATCTTTTTTATATGTATCAATTGGAAGCTTACCTAAATAATAATTA 523309 Query 136827 GTTTCATGATAAAGCTCACAAGGTCCTTTTTCTTTTGCTAAATCAACAGAGGCCTTAATT 136886 |||| || | | | ||||| |||||||||||| ||||| ||| || || || | | Sbjct 523308 GTTTGATTAAATAATAAACAAGATCCTTTTTCTTTGGCTAATTCACAGGAAGCTTTTAGT 523249 Query 136887 AATCCATACTGTAAACGTTCAAATAACTCATGAGTAAACTGTTGAGCATTATCATAATTT 136946 || |||||||| |||||| | ||| || || | || ||| | ||| | Sbjct 523248 AAATAATACTGTATTGCTTCAAAAGTTTTATGCGTTAAATTTTTTGCACTGCCATC--TG 523191 Query 136947 AAAA----ACTGCGA----AGCTAAAGAAGCAGCATAATTAGTTACACCAACACCTAATG 136998 || | ||| | ||||||| || ||| ||||| ||||||||| ||||| | Sbjct 523190 AATAGCGTACTTTGTTTTTAGCTAAATAATATGCAAAATTAATTACACCAATTCCTAAAG 523131 Query 136999 CACGGCGTTTTTTAGCAATCAATGCTTTTTC------TACAGGATAATCTTGATAATCTA 137052 ||| | | |||| || |||| | ||| ||||| | |||||| |||| Sbjct 523130 AACGTCTTGAAACAGCAG---ATTTTTTTGCACATAATACTGGATAGTTTTGATATTCTA 523074 Query 137053 ATAAAGCATCCAATGCTCTAACAGCCACACGTGCAATTTTATTAATTTGTTCTTGGTCTT 137112 ||| |||| || || | |||| | | | || || | | || | | Sbjct 523073 ATATTTCATCTAAAGCGCGTACAGATAGTATAGATAATTCCTTGA---GATCATT---TA 523020 Query 137113 GATAATCAAATGAATCAAGTACAAATGCTGATAGAGTGCAAAGTGCTATTTCCCCATCAT 137172 || || || | || | || | ||||||||||| |||||||| ||||| |||| | Sbjct 523019 AATTATTAATTAAACCTAGATTGAGAGCTGATAGAGTACAAAGTGCAATTTCTCCATTTT 522960 Query 137173 CTTTACTAATATCACTC---------GTGGGTAATGTAATCTCTGCGCATAAATTGCTTA 137223 | | ||||| | | || || |||||||| ||| || || || | Sbjct 522959 TATCATCAATATTATTTAGTGGTTTTGTAGGCAATGTAATTTCTAAACACAAGTTAGATT 522900 Query 137224 ATCTAATAGGAGACGTTTCTCTAATAAATGAACTTTGTCTATTAACATTATCAACAAAGA 137283 ||| || | | | || | |||||| ||| ||| |||| || ||| ||| Sbjct 522899 GTCTTATTGTTGCCAATTTAGAATTAAATGGACTATGTGAATTACAATGATCTACATTTT 522840 Query 137284 ATGGATAAATTCTTGCTGTATTAGCACGCTCTGT--TAATAAAATAGAAAATACTTCAGA 137341 | ||| || | | | || || | ||| |||| ||| |||| | | ||| Sbjct 522839 GTATATAGATACGTCCAGTTGATGCTCTTTCTCGCATAATTAAACAGAACAAA--TCAAT 522782 Query 137342 TGCCTTGATTCGTTTTTTACGAATAGAAGTATCTTTTTCTGCGGCTTCGTATAAATCACG 137401 ||| || || | |||||| | ||| ||| |||||| || ||||||| | Sbjct 522781 TGCATTAATACTTTTTTTTCTTATATTGCTATTTTTTTCATAT--TTAATATAAATTTCC 522724 Query 137402 G--AATTTCTGTTCGTTACTAAAATAAGCATCATACATACCAGGGATTTCATGTGGACTA 137459 ||||| | || | ||| || | ||| | ||| | ||| |||||| Sbjct 522723 TTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGTTAGGAACGTCAGAAGGACTA 522664 Query 137460 AACAATGTAATATAATCATCATTAATTAG---TCGTTCAATCATAAGGTCATTAATTTGA 137516 || |||||||| | | || | | ||| || || | ||| | | ||||||||| Sbjct 522663 AATAATGTAATTTTTTT-TCCT--AGTAGCATTCTTTGATACATTAATTTATTAATTTGT 522607 Query 137517 ACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATTTTTAAGAACT 137576 ||| ||||||| | |||||| | | ||||||||||| ||| |||||||||| | |||| Sbjct 522606 ACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACT 522547 Query 137577 AACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGAACCACCTCGA 137636 || || ||||| | ||| || ||||| ||||||||| | | ||| || | || |||| | Sbjct 522546 AATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTA 522487 Query 137637 ATCCCACCTTGGGAACATGATTTTACAGATGCCAAATGG--GT-TTTCCAAAATGGAATG 137693 | |||||||| ||||| |||||||| ||| ||| || ||| |||| ||||| Sbjct 522486 ACTCCACCTTGAGAACAAGATTTTAC---TGCGCTTTGGAAGTGTTTATAAAAAGGAAT- 522431 Query 137694 ACA-CCGGTATGGACAACTTCGCCAAATCCTATTTTAGACCCTTCAGCCCTATACATACC 137752 ||| |||||||| | |||| ||| || || | ||| ||| | | ||| Sbjct 522430 ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACC 522371 Query 137753 GGCATTAATACCAATACCAGCTCTTTTAGAAATGTATTTTACAATAGCTGCATTTGTTTC 137812 || ||||| || || || |||| || ||||| ||||||||||| || | |||| | Sbjct 522370 AGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGC 522311 Query 137813 ATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGAACTAAATTGACGTGT 137872 ||||||||| | |||| ||| | | ||||| | || ||||||||||||||||| || Sbjct 522310 ATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGT 522251 Query 137873 TGGGGTTCTTACACCAGACAAAATTGGTGTTGGTAAAGA 137911 ||| |||||||| || |||| ||| ||||| |||| ||| Sbjct 522250 TGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 522212 Score = 134 bits (148), Expect = 1e-26 Identities = 260/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 135652 TTAATAAGATCATCATAATATTTTGTAATGGATTCTGCTCGGGCCATAATTGCGTCATCA 135711 ||||| | | ||||||||| | | ||| |||||| || | |||| | || | Sbjct 524666 TTAATTAATTTATCATAATAAATAGAAATATCTTCTGCACGATCATTAATGTTTTTATTA 524607 Query 135712 AGAACAATCTCATCAAATTCTTTTGAAGGGTCTTCATAAAGATTACGCATAATATGGGTA 135771 || ||| ||||||||| | || || | | | || ||| | || ||||| ||| Sbjct 524606 GAAATAATATCATCAAATACGACAGATGGATGATTAATAATATTTCTAATTATATGTGTA 524547 Query 135772 TACGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCATGTTTCTAAAGAT 135831 || ||||| ||||||||||| || ||| ||||| || | ||||||||||||||| Sbjct 524546 TATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCATGTTTCTAATTCG 524487 Query 135832 ACATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGGATTGAATCTAAT 135891 | |||| |||| ||| ||||| ||||| ||| ||||| || ||||| | | Sbjct 524486 GGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGAATAGAATCAAGT 524427 Query 135892 AATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCAGGTAATTTGTCA 135951 || |||||||||||||||||| | |||| || |||||||| |||||| || | | Sbjct 524426 AAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAGAAGGTAAATTTTGA 524367 Query 135952 TATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaaaaGCTTAAAG-- 136009 | | | ||||| | ||| | || |||||| || | ||||||||| | |||| Sbjct 524366 AAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAAAAAA--TGAAAGTT 524309 Query 136010 CTTTTTCAGTCAAGTCTTCAAA 136031 ||||||| | | | |||||| Sbjct 524308 GTTTTTCAATTAGTTTTTCAAA 524287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517270715913360