Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028762.1
Length=161989
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 253 2e-62
>seq129631
Length=630463
Score = 253 bits (280), Expect = 2e-62
Identities = 882/1359 (65%), Gaps = 62/1359 (5%)
Strand=Plus/Minus
Query 136590 CCGTCTTTAGAAGCTTTTGCCGTCACAGATTTTCTTGGTGGCTCAATACCATTTGTGCTA 136649
|| ||||||||||||||| | ||| | |||||| || ||||||||||| || |
Sbjct 523545 CCATCTTTAGAAGCTTTTATACTGACAAAACCTCTTGGAGGTTCAATACCATTAGTAGCA 523486
Query 136650 TTAGAAACTTGAGAAGATGATTCACAAGGCATTAATGCAGATAAAGTACTGTTTCTGATA 136709
||||| | ||||||||| | ||| |||||||||| ||||||||||| ||||| |
Sbjct 523485 TTAGATATTTGAGAAGAAGTTTCTGAAGGCATTAAAGCAGATAAAGTGGAATTTCTTAAT 523426
Query 136710 CCGTATTGCTTAAGGTCTTTACGTAAAGATTCCCAATCACAAACATATTCTGGTTTA--A 136767
|| |||| |||| | ||| ||||| || | ||||| || | | ||||| | |
Sbjct 523425 CCATATTTTTTAATTTTTTTTCGTAATGAATTCCAATTTAAA---TGTAATGGTTCATTA 523369
Query 136768 C-TACTTTATCAAGGTTTTTATTATACCAATCAATGGGTAATAAGCCTTGAGAATATTTA 136826
| || ||| | | ||| ||||| |||||| || | ||| | |||| |||
Sbjct 523368 CATATCGAATCTACATCTTTTTTATATGTATCAATTGGAAGCTTACCTAAATAATAATTA 523309
Query 136827 GTTTCATGATAAAGCTCACAAGGTCCTTTTTCTTTTGCTAAATCAACAGAGGCCTTAATT 136886
|||| || | | | ||||| |||||||||||| ||||| ||| || || || | |
Sbjct 523308 GTTTGATTAAATAATAAACAAGATCCTTTTTCTTTGGCTAATTCACAGGAAGCTTTTAGT 523249
Query 136887 AATCCATACTGTAAACGTTCAAATAACTCATGAGTAAACTGTTGAGCATTATCATAATTT 136946
|| |||||||| |||||| | ||| || || | || ||| | ||| |
Sbjct 523248 AAATAATACTGTATTGCTTCAAAAGTTTTATGCGTTAAATTTTTTGCACTGCCATC--TG 523191
Query 136947 AAAA----ACTGCGA----AGCTAAAGAAGCAGCATAATTAGTTACACCAACACCTAATG 136998
|| | ||| | ||||||| || ||| ||||| ||||||||| ||||| |
Sbjct 523190 AATAGCGTACTTTGTTTTTAGCTAAATAATATGCAAAATTAATTACACCAATTCCTAAAG 523131
Query 136999 CACGGCGTTTTTTAGCAATCAATGCTTTTTC------TACAGGATAATCTTGATAATCTA 137052
||| | | |||| || |||| | ||| ||||| | |||||| ||||
Sbjct 523130 AACGTCTTGAAACAGCAG---ATTTTTTTGCACATAATACTGGATAGTTTTGATATTCTA 523074
Query 137053 ATAAAGCATCCAATGCTCTAACAGCCACACGTGCAATTTTATTAATTTGTTCTTGGTCTT 137112
||| |||| || || | |||| | | | || || | | || | |
Sbjct 523073 ATATTTCATCTAAAGCGCGTACAGATAGTATAGATAATTCCTTGA---GATCATT---TA 523020
Query 137113 GATAATCAAATGAATCAAGTACAAATGCTGATAGAGTGCAAAGTGCTATTTCCCCATCAT 137172
|| || || | || | || | ||||||||||| |||||||| ||||| |||| |
Sbjct 523019 AATTATTAATTAAACCTAGATTGAGAGCTGATAGAGTACAAAGTGCAATTTCTCCATTTT 522960
Query 137173 CTTTACTAATATCACTC---------GTGGGTAATGTAATCTCTGCGCATAAATTGCTTA 137223
| | ||||| | | || || |||||||| ||| || || || |
Sbjct 522959 TATCATCAATATTATTTAGTGGTTTTGTAGGCAATGTAATTTCTAAACACAAGTTAGATT 522900
Query 137224 ATCTAATAGGAGACGTTTCTCTAATAAATGAACTTTGTCTATTAACATTATCAACAAAGA 137283
||| || | | | || | |||||| ||| ||| |||| || ||| |||
Sbjct 522899 GTCTTATTGTTGCCAATTTAGAATTAAATGGACTATGTGAATTACAATGATCTACATTTT 522840
Query 137284 ATGGATAAATTCTTGCTGTATTAGCACGCTCTGT--TAATAAAATAGAAAATACTTCAGA 137341
| ||| || | | | || || | ||| |||| ||| |||| | | |||
Sbjct 522839 GTATATAGATACGTCCAGTTGATGCTCTTTCTCGCATAATTAAACAGAACAAA--TCAAT 522782
Query 137342 TGCCTTGATTCGTTTTTTACGAATAGAAGTATCTTTTTCTGCGGCTTCGTATAAATCACG 137401
||| || || | |||||| | ||| ||| |||||| || ||||||| |
Sbjct 522781 TGCATTAATACTTTTTTTTCTTATATTGCTATTTTTTTCATAT--TTAATATAAATTTCC 522724
Query 137402 G--AATTTCTGTTCGTTACTAAAATAAGCATCATACATACCAGGGATTTCATGTGGACTA 137459
||||| | || | ||| || | ||| | ||| | ||| ||||||
Sbjct 522723 TTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGTTAGGAACGTCAGAAGGACTA 522664
Query 137460 AACAATGTAATATAATCATCATTAATTAG---TCGTTCAATCATAAGGTCATTAATTTGA 137516
|| |||||||| | | || | | ||| || || | ||| | | |||||||||
Sbjct 522663 AATAATGTAATTTTTTT-TCCT--AGTAGCATTCTTTGATACATTAATTTATTAATTTGT 522607
Query 137517 ACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATTTTTAAGAACT 137576
||| ||||||| | |||||| | | ||||||||||| ||| |||||||||| | ||||
Sbjct 522606 ACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACT 522547
Query 137577 AACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGAACCACCTCGA 137636
|| || ||||| | ||| || ||||| ||||||||| | | ||| || | || |||| |
Sbjct 522546 AATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTA 522487
Query 137637 ATCCCACCTTGGGAACATGATTTTACAGATGCCAAATGG--GT-TTTCCAAAATGGAATG 137693
| |||||||| ||||| |||||||| ||| ||| || ||| |||| |||||
Sbjct 522486 ACTCCACCTTGAGAACAAGATTTTAC---TGCGCTTTGGAAGTGTTTATAAAAAGGAAT- 522431
Query 137694 ACA-CCGGTATGGACAACTTCGCCAAATCCTATTTTAGACCCTTCAGCCCTATACATACC 137752
||| |||||||| | |||| ||| || || | ||| ||| | | |||
Sbjct 522430 ACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACC 522371
Query 137753 GGCATTAATACCAATACCAGCTCTTTTAGAAATGTATTTTACAATAGCTGCATTTGTTTC 137812
|| ||||| || || || |||| || ||||| ||||||||||| || | |||| |
Sbjct 522370 AGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGC 522311
Query 137813 ATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGAACTAAATTGACGTGT 137872
||||||||| | |||| ||| | | ||||| | || ||||||||||||||||| ||
Sbjct 522310 ATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGT 522251
Query 137873 TGGGGTTCTTACACCAGACAAAATTGGTGTTGGTAAAGA 137911
||| |||||||| || |||| ||| ||||| |||| |||
Sbjct 522250 TGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 522212
Score = 134 bits (148), Expect = 1e-26
Identities = 260/382 (68%), Gaps = 4/382 (1%)
Strand=Plus/Minus
Query 135652 TTAATAAGATCATCATAATATTTTGTAATGGATTCTGCTCGGGCCATAATTGCGTCATCA 135711
||||| | | ||||||||| | | ||| |||||| || | |||| | || |
Sbjct 524666 TTAATTAATTTATCATAATAAATAGAAATATCTTCTGCACGATCATTAATGTTTTTATTA 524607
Query 135712 AGAACAATCTCATCAAATTCTTTTGAAGGGTCTTCATAAAGATTACGCATAATATGGGTA 135771
|| ||| ||||||||| | || || | | | || ||| | || ||||| |||
Sbjct 524606 GAAATAATATCATCAAATACGACAGATGGATGATTAATAATATTTCTAATTATATGTGTA 524547
Query 135772 TACGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCATGTTTCTAAAGAT 135831
|| ||||| ||||||||||| || ||| ||||| || | |||||||||||||||
Sbjct 524546 TATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCATGTTTCTAATTCG 524487
Query 135832 ACATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGGATTGAATCTAAT 135891
| |||| |||| ||| ||||| ||||| ||| ||||| || ||||| | |
Sbjct 524486 GGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGAATAGAATCAAGT 524427
Query 135892 AATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCAGGTAATTTGTCA 135951
|| |||||||||||||||||| | |||| || |||||||| |||||| || | |
Sbjct 524426 AAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTAGAAGGTAAATTTTGA 524367
Query 135952 TATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaaaaGCTTAAAG-- 136009
| | | ||||| | ||| | || |||||| || | ||||||||| | ||||
Sbjct 524366 AAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAAAAAAA--TGAAAGTT 524309
Query 136010 CTTTTTCAGTCAAGTCTTCAAA 136031
||||||| | | | ||||||
Sbjct 524308 GTTTTTCAATTAGTTTTTCAAA 524287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517270715913360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |