Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028773.1
Length=182145
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 156 5e-33
>seq129631
Length=630463
Score = 156 bits (172), Expect = 5e-33
Identities = 217/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 18415 GCAGTCGTAAATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGT 18474
||| | ||||| ||| || | |||| || || || || ||||||||||||| ||||||
Sbjct 522323 GCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGA 522382
Query 18475 GCGGAAGGAAGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGG 18534
|| |||||||| | | ||| |||| || || || |||||| || |
Sbjct 522383 GCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTAT 522442
Query 18535 AAACATTTCCAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCA 18594
||||| ||||| | || || ||||| ||||| ||||| || ||| | || || || |||
Sbjct 522443 AAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCA 522502
Query 18595 ACTCTGTATTATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAAC 18654
||| | | ||| || || |||||||| ||| | ||||| | | ||| | ||||||||
Sbjct 522503 ACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAAT 522562
Query 18655 AAAGGTGTTGATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTG 18714
| ||| |||| ||||| | | ||||| |||||||||| | ||||||| |||||| |
Sbjct 522563 AGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAATAAATTA 522622
Query 18715 ATGT 18718
||||
Sbjct 522623 ATGT 522626
Score = 98.7 bits (108), Expect = 1e-15
Identities = 431/671 (64%), Gaps = 27/671 (4%)
Strand=Plus/Plus
Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141
|| ||| || | || || ||||| |||||||||| || | || || ||| | ||
Sbjct 524272 CAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTTTGGAGACCA 524331
Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201
||||| | || || || |||| || |||| | | |||||||| | ||||||
Sbjct 524332 GAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCTTCTAACGAAAAA 524391
Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261
||||| |||| ||||| || ||||| | ||||| ||| | |||| ||| | |
Sbjct 524392 CATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAAGGAAGAAGT 524451
Query 20262 CCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCCTACC 20321
||||||| |||||| | | || || ||| | | | || ||||||||| ||
Sbjct 524452 CCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACATGGATTGAAACA 524511
Query 20322 TGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTAC 20381
||| | || || |||||||| || ||||| |||||||| || || | || | ||
Sbjct 524512 TGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGAAATAT-TAT 524570
Query 20382 GAAG-ATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTG-CAATCATGAAGCGTG 20439
|| |||| || | ||||| || || || | || || | |||| ||||
Sbjct 524571 TAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTAATGAT-CGTG 524629
Query 20440 CTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCATCATT 20499
| || | | || | ||||| || || | ||||| || || ||| ||| ||
Sbjct 524630 CAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGGCAT--TT 524687
Query 20500 TCTGTAATAACTTTACAGCAGAGACGGAAGTTAATG-----AAAATTATAAACGTTTGAT 20554
|| | || ||| || | || |||||| |||||| || | || |
Sbjct 524688 ACTTGGAGAAGG--ACATCATA-----AAATTAATGGGAAAAAAATTGAAATCAATTTAA 524740
Query 20555 GTTGCGAGATATTAAAAAGAA-ACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAG 20613
| ||||||||| || ||| ||||| ||| | || |||| ||| ||||
Sbjct 524741 ACT------TATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAG 524794
Query 20614 CAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAA-GATAAGAAAATG 20672
| ||| | || || ||| |||||||| | || |||||||| ||| || || | ||||
Sbjct 524795 CCATTAGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAA-ATAATG 524853
Query 20673 GAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGC 20732
||||| | |||||||||||| || | || || || |||||| | | ||||||| ||
Sbjct 524854 GAAGGAAATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGA 524913
Query 20733 ACACAATATAT 20743
|| ||| ||||
Sbjct 524914 ACTCAACATAT 524924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581649678117200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |