Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq129631 156 5e-33 >seq129631 Length=630463 Score = 156 bits (172), Expect = 5e-33 Identities = 217/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 18415 GCAGTCGTAAATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGT 18474 ||| | ||||| ||| || | |||| || || || || ||||||||||||| |||||| Sbjct 522323 GCAATTGTAAAATATGTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGA 522382 Query 18475 GCGGAAGGAAGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGG 18534 || |||||||| | | ||| |||| || || || |||||| || | Sbjct 522383 GCTTTAGGAAGTCCTATCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTAT 522442 Query 18535 AAACATTTCCAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCA 18594 ||||| ||||| | || || ||||| ||||| ||||| || ||| | || || || ||| Sbjct 522443 AAACACTTCCAAAGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCA 522502 Query 18595 ACTCTGTATTATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAAC 18654 ||| | | ||| || || |||||||| ||| | ||||| | | ||| | |||||||| Sbjct 522503 ACTGTTTTTTACCCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAAT 522562 Query 18655 AAAGGTGTTGATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTG 18714 | ||| |||| ||||| | | ||||| |||||||||| | ||||||| |||||| | Sbjct 522563 AGAGGAATTGAAGAAAATAGAGTACGTCATCTTGATTATGCTGTACAAATTAATAAATTA 522622 Query 18715 ATGT 18718 |||| Sbjct 522623 ATGT 522626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 431/671 (64%), Gaps = 27/671 (4%) Strand=Plus/Plus Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141 || ||| || | || || ||||| |||||||||| || | || || ||| | || Sbjct 524272 CAAAAATATAATATTTTTGAAAAACTAATTGAAAAACAACTTTCATTTTTTTGGAGACCA 524331 Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201 ||||| | || || || |||| || |||| | | |||||||| | |||||| Sbjct 524332 GAAGAAATAGATTTATCTAAAGATAGAATAGATTTTCAAAATTTACCTTCTAACGAAAAA 524391 Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261 ||||| |||| ||||| || ||||| | ||||| ||| | |||| ||| | | Sbjct 524392 CATATTTTTATAAGTAATTTAAAATATCAAACTTTACTTGATTCTATTCAAGGAAGAAGT 524451 Query 20262 CCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCCTACC 20321 ||||||| |||||| | | || || ||| | | | || ||||||||| || Sbjct 524452 CCTAACATCGCTTTTTTACCTATAGTTTCTATTCCCGAATTAGAAACATGGATTGAAACA 524511 Query 20322 TGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTAC 20381 ||| | || || |||||||| || ||||| |||||||| || || | || | || Sbjct 524512 TGGTCTTTTTCAGAGACAATTCATTCACGTTCATATACACATATAATTAGAAATAT-TAT 524570 Query 20382 GAAG-ATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTG-CAATCATGAAGCGTG 20439 || |||| || | ||||| || || || | || || | |||| |||| Sbjct 524571 TAATCATCCATCTGTCGTATTTGATGATATTATTTCTAATAAAAACATTAATGAT-CGTG 524629 Query 20440 CTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCATCATT 20499 | || | | || | ||||| || || | ||||| || || ||| ||| || Sbjct 524630 CAGAAGATATTTCTATTTATTATGATAAATTAATTAAAATAACAGCTTATTGGCAT--TT 524687 Query 20500 TCTGTAATAACTTTACAGCAGAGACGGAAGTTAATG-----AAAATTATAAACGTTTGAT 20554 || | || ||| || | || |||||| |||||| || | || | Sbjct 524688 ACTTGGAGAAGG--ACATCATA-----AAATTAATGGGAAAAAAATTGAAATCAATTTAA 524740 Query 20555 GTTGCGAGATATTAAAAAGAA-ACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAAG 20613 | ||||||||| || ||| ||||| ||| | || |||| ||| |||| Sbjct 524741 ACT------TATTAAAAAAAAGACTATATCTTTGTTTAATTAGTGTAAACGTACTAGAAG 524794 Query 20614 CAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAA-GATAAGAAAATG 20672 | ||| | || || ||| |||||||| | || |||||||| ||| || || | |||| Sbjct 524795 CCATTAGATTTTACGTTAGTTTTGCTTGTTCATTCGCATTTGCTGAAAGAGAA-ATAATG 524853 Query 20673 GAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGC 20732 ||||| | |||||||||||| || | || || || |||||| | | ||||||| || Sbjct 524854 GAAGGAAATGCTAAAATTATCCGATTAATAGCACGAGATGAAGCATTACACTTGACTGGA 524913 Query 20733 ACACAATATAT 20743 || ||| |||| Sbjct 524914 ACTCAACATAT 524924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581649678117200