Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 156 5e-33
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 156 bits (172), Expect = 5e-33
Identities = 308/453 (68%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823
|| |||||| | ||| | || ||| | || || | || || || |||||| | ||
Sbjct 522179 CGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGA 522238
Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAG---GCAGGTGATTCA 22880
| || || ||||| || |||||||| || || | ||||| |||| | |||
Sbjct 522239 GTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATT-- 522296
Query 22881 TTAAAGTCTATCAATAAGGCTTCCGCTT---CAATTGTTGAATATATCTCTAAACGCGCT 22937
|||| ||||| ||| ||| | || ||||||| ||||| | ||| |||| ||
Sbjct 522297 -TAAACTCTATTAAT---GCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCA 522352
Query 22938 GGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAA 22997
||||| || ||||||| |||| ||||| || ||| | || | | || |||
Sbjct 522353 GGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAA 522412
Query 22998 GTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGT 23057
| | ||||| || ||||||||||| ||||| || || | || || ||||| |||
Sbjct 522413 GCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGT 522472
Query 23058 TCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAA 23117
|| || || ||| || | || || || || |||| || ||| || || |||||| | |||
Sbjct 522473 TCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAA 522532
Query 23118 GTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCAT 23177
|||||||| | | ||||| |||||||| | ||| | |||||||| | | ||||||
Sbjct 522533 ATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCAT 522592
Query 23178 ATGGATTATGGTGTTCAACTGAATGATCTAATG 23210
| ||||||| ||| ||| | ||| | |||||
Sbjct 522593 CTTGATTATGCTGTACAAATTAATAAATTAATG 522625
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Minus
Query 92979 GGTTCGAGTCCCACTTCTCGCACCAAATT---TGCGGATATCGTATAATGG-TATTACCT 93034
||||||| ||| ||||| ||||||| |||||| |||||||||||| ||||||||
Sbjct 3702 GGTTCGAATCC---TTCTCCCACCAAAAAAAATGCGGACATCGTATAATGGCTATTACCT 3646
Query 93035 CAGACTTCCAATCTGATGATGTGAGTTCGATTC 93067
||| ||||||| ||||||||| | |||| ||||
Sbjct 3645 CAGCCTTCCAAGCTGATGATGCGGGTTCAATTC 3613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533672083789760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |