Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq129631 156 5e-33 seq146710 84.2 2e-11 >seq129631 Length=630463 Score = 156 bits (172), Expect = 5e-33 Identities = 308/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 || |||||| | ||| | || ||| | || || | || || || |||||| | || Sbjct 522179 CGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCCACACCGATTATGTCAGGA 522238 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAG---GCAGGTGATTCA 22880 | || || ||||| || |||||||| || || | ||||| |||| | ||| Sbjct 522239 GTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATTGAATGTGCAGATAATT-- 522296 Query 22881 TTAAAGTCTATCAATAAGGCTTCCGCTT---CAATTGTTGAATATATCTCTAAACGCGCT 22937 |||| ||||| ||| ||| | || ||||||| ||||| | ||| |||| || Sbjct 522297 -TAAACTCTATTAAT---GCTACAACTAGTGCAATTGTAAAATATGTTTCTCAACGAGCA 522352 Query 22938 GGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAA 22997 ||||| || ||||||| |||| ||||| || ||| | || | | || ||| Sbjct 522353 GGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCTATCAGAAATGGAGAA 522412 Query 22998 GTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGT 23057 | | ||||| || ||||||||||| ||||| || || | || || ||||| ||| Sbjct 522413 GCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAAAGCGCAGTAAAATCTTGT 522472 Query 23058 TCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAA 23117 || || || ||| || | || || || || |||| || ||| || || |||||| | ||| Sbjct 522473 TCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTACCCAATATGGCATCTAGAA 522532 Query 23118 GTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCAT 23177 |||||||| | | ||||| |||||||| | ||| | |||||||| | | |||||| Sbjct 522533 ATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTACGTCAT 522592 Query 23178 ATGGATTATGGTGTTCAACTGAATGATCTAATG 23210 | ||||||| ||| ||| | ||| | ||||| Sbjct 522593 CTTGATTATGCTGTACAAATTAATAAATTAATG 522625 >seq146710 Length=16940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Minus Query 92979 GGTTCGAGTCCCACTTCTCGCACCAAATT---TGCGGATATCGTATAATGG-TATTACCT 93034 ||||||| ||| ||||| ||||||| |||||| |||||||||||| |||||||| Sbjct 3702 GGTTCGAATCC---TTCTCCCACCAAAAAAAATGCGGACATCGTATAATGGCTATTACCT 3646 Query 93035 CAGACTTCCAATCTGATGATGTGAGTTCGATTC 93067 ||| ||||||| ||||||||| | |||| |||| Sbjct 3645 CAGCCTTCCAAGCTGATGATGCGGGTTCAATTC 3613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533672083789760