Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq129631 120 3e-22 >seq129631 Length=630463 Score = 120 bits (132), Expect = 3e-22 Identities = 305/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 140176 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 140235 |||||||| ||| ||||||| || || || | | ||||| |||| ||| |||| || Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556 Query 140236 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCG 140295 || | || | | ||||| | ||| |||||||| || || || | | ||| || || Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496 Query 140296 CCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 140354 || || | || || ||||||||||||||||| || | ||| | ||| ||| | || Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTTTATAAAA 522437 Query 140355 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 140414 |||||| || |||||| |||| ||| | || | ||| ||| ||| Sbjct 522436 AGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA-- 522379 Query 140415 CATT---CCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTT 140471 ||| |||||||||| || || || || |||| | |||||| | ||||| | Sbjct 522378 -ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACT 522320 Query 140472 GTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAA 140531 || ||||||||| || | | |||| | | |||||| | || |||||||| || Sbjct 522319 AGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAA 522260 Query 140532 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 140591 || ||||| || || | ||| || | |||||| || || || ||||| || | | | Sbjct 522259 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 522200 Query 140592 AGATACGGCATTATAGAAACGGATAATATGCTTAAGACGA 140631 || | |||||||| || || ||||| || | |||| Sbjct 522199 GGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 522160 Score = 102 bits (112), Expect = 8e-17 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 67173 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 67232 || ||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 130068 TATTTTAATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 130127 Query 67233 TATCCATCTGAGCTAAAGGGCC-TTTGTTTATG 67264 | ||| ||||||||||||||| | | |||||| Sbjct 130128 TGACCA-CTGAGCTAAAGGGCCATATATTTATG 130159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517628447793040