Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028820.1
Length=162101
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 120 3e-22
>seq129631
Length=630463
Score = 120 bits (132), Expect = 3e-22
Identities = 305/460 (66%), Gaps = 8/460 (2%)
Strand=Plus/Minus
Query 140176 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 140235
|||||||| ||| ||||||| || || || | | ||||| |||| ||| |||| ||
Sbjct 522615 TTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTT 522556
Query 140236 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCG 140295
|| | || | | ||||| | ||| |||||||| || || || | | ||| || ||
Sbjct 522555 TTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCC 522496
Query 140296 CCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 140354
|| || | || || ||||||||||||||||| || | ||| | ||| ||| | ||
Sbjct 522495 CCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTTTATAAAA 522437
Query 140355 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 140414
|||||| || |||||| |||| ||| | || | ||| ||| |||
Sbjct 522436 AGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGA-- 522379
Query 140415 CATT---CCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTT 140471
||| |||||||||| || || || || |||| | |||||| | ||||| |
Sbjct 522378 -ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACT 522320
Query 140472 GTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAA 140531
|| ||||||||| || | | |||| | | |||||| | || |||||||| ||
Sbjct 522319 AGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGAACTAAA 522260
Query 140532 CTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTTT 140591
|| ||||| || || | ||| || | |||||| || || || ||||| || | | |
Sbjct 522259 TTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGT 522200
Query 140592 AGATACGGCATTATAGAAACGGATAATATGCTTAAGACGA 140631
|| | |||||||| || || ||||| || | ||||
Sbjct 522199 GGAAATTGCATTATAAAAGCGCTGAATATAATTCATACGA 522160
Score = 102 bits (112), Expect = 8e-17
Identities = 80/93 (86%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 67173 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 67232
|| ||| |||||||| ||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 130068 TATTTTAATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 130127
Query 67233 TATCCATCTGAGCTAAAGGGCC-TTTGTTTATG 67264
| ||| ||||||||||||||| | | ||||||
Sbjct 130128 TGACCA-CTGAGCTAAAGGGCCATATATTTATG 130159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517628447793040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |