Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq129631 140 5e-28 >seq129631 Length=630463 Score = 140 bits (154), Expect = 5e-28 Identities = 292/426 (69%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325 || ||||||||||| | | |||||||||| ||| | || || || | |||||| | Sbjct 522600 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 522541 Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385 ||||||| ||||| ||||| || |||||| | ||| || || || || | || ||| Sbjct 522540 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 522481 Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACA-CCAGT 236444 ||||||||||| ||||| || || |||| |||||||| | || |||| |||| || || Sbjct 522480 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAA-TACATCCGGT 522422 Query 236445 GTG--ACGAATCTCACCTGAACGA-ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501 || | | |||| | | || | |||| ||| ||| ||||| ||| | || Sbjct 522421 ATGAAATGCTTCTC-CATTTCTGATAGGACT--TCCTAAAGCTCGAATTTGACCAGCGTT 522365 Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561 | || || ||||| || | | || || ||||||||| ||| |||| || Sbjct 522364 AATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAAT 522305 Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACAC--GAACTAAACTGGCGTGTCGGG 236619 || | ||| || | |||||| ||||||||| |||||||| || || || || Sbjct 522304 AGAGTTTAAATTATCTGCACATTCAA--TTAACACACAAGAACTAAATTGACGAGTTGGT 522247 Query 236620 GTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTG 236679 || | || |||| |||||||||||| |||| || | ||| ||| |||| |||||| Sbjct 522246 GTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTA 522187 Query 236680 TAGAAG 236685 || ||| Sbjct 522186 TAAAAG 522181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792273904382720