Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq129631 156 5e-33 >seq129631 Length=630463 Score = 156 bits (172), Expect = 5e-33 Identities = 248/353 (70%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 143969 CCTTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAA 144028 ||| | || ||||| | ||| | | |||||||| ||| | |||||| || || ||| || Sbjct 522567 CCTCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAA 522508 Query 144029 GCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAA 144088 |||| || || || || | | ||||||||| ||||| ||||| || || | ||||| Sbjct 522507 ACAGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAG 522448 Query 144089 TGTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCT 144148 ||||| | || |||||| |||||||| |||| || | | ||| || ||| Sbjct 522447 TGTTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCT 522388 Query 144149 TCAGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATT 144208 ||| ||||| |||| |||| || || || || || |||| ||||| |||| | Sbjct 522387 AAAGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACA 522328 Query 144209 ATTGAGTTAGCAGTTTTGTTAATAGA-TTTCAGTGAGTCGCCTGCTTCAATAACCACACA 144267 |||| ||| || |||||||| ||| | | | || | |||||| | |||||| Sbjct 522327 ATTGCACTAGTTGTAGCATTAATAGAGTTTAAATTA-TCTGCACATTCAATTAACACACA 522269 Query 144268 AGAACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTA 144320 ||||||||||||||| |||||||| | | |||| | |||||| || || |||| Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 522216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544541383669680