Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq129631 138 1e-27 >seq129631 Length=630463 Score = 138 bits (152), Expect = 1e-27 Identities = 291/433 (67%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 142874 TAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTTTTTCAGAACGAGCAGA 142933 || || | |||||| | | || || |||| ||| | || ||||| | ||| | | | Sbjct 522600 TAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 522541 Query 142934 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 142993 ||||||| ||| | |||||| || || ||| || |||| || || || || | | |||| Sbjct 522540 TTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTCCA 522481 Query 142994 CCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAATGGAATAACACCGGTA 143053 ||||| ||||| ||||| ||||| | ||||| || || | || |||||| |||||| Sbjct 522480 CCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGGTA 522421 Query 143054 TGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 143113 || |||| || | | ||| || ||| ||| ||||| |||| |||| || Sbjct 522420 TGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAATG 522361 Query 143114 CCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGCAGTTTTATTAATTGAT 143173 || || ||||| |||| ||||| ||| | | |||| ||| || |||||| || Sbjct 522360 CCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAGAG 522301 Query 143174 TTCAGCGAGTCACCTGC---TTCAATAACAACGCAAGAACTAAACTGACGGGTCGGGGTA 143230 || | | | | |||| |||||| | || ||||||||||| ||||| || || || Sbjct 522300 TTTA---AATTATCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 522244 Query 143231 CGAGCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGCTAACAGCATCATAA 143290 | | || | |||||| || || || | || || | | ||| || |||| |||| Sbjct 522243 CTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTTAAAAGTGGAAATTGCATTATAA 522184 Query 143291 AAACGAATAATAT 143303 || || ||||| Sbjct 522183 AAGCGCTGAATAT 522171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544368905799120