Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_028940.1
Length=170286
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 170 2e-37
>seq129631
Length=630463
Score = 170 bits (188), Expect = 2e-37
Identities = 424/631 (67%), Gaps = 31/631 (5%)
Strand=Plus/Minus
Query 145069 AACAAATCTAAAGCTTTGATTCGTTTTTTACGAATTACTGG-AtttttttC-TAGTGATT 145126
|||||||| | || || || | |||||| | || | || ||||||||| || | | |
Sbjct 522792 AACAAATCAATTGCATTAATACTTTTTTTTCTTAT-ATTGCTATTTTTTTCATATTTAAT 522734
Query 145127 CATAAATCTCTTTAAACTTTATTCTATCAGTAAAATACGAATTATATAATTCATTATTAT 145186
|||||| || ||||| ||| || ||| | ||| | | |||||||| | || |
Sbjct 522733 -ATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGT---TAGGAA 522678
Query 145187 AGACATCAGGACTAAAAAGAGTAATGTAATCGTTTTTAAT-----CAGACGTTCAATCAT 145241
| || ||||||||| ||||||||| ||||| | || | || | |||
Sbjct 522677 CGTCAGAAGGACTAAA-----TAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 522623
Query 145242 CAAATCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTT 145301
|| | ||| ||||| | ||||||||||||| | | || ||||||||| | ||| |
Sbjct 522622 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 522563
Query 145302 GTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGT 145361
|| ||||| | ||||| | |||||| ||| || ||||| ||||||||| | | ||
Sbjct 522562 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 522503
Query 145362 TGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGT-TT 145420
||| || || || | || |||||||||||||||| ||| || | || | ||| ||
Sbjct 522502 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTT 522444
Query 145421 TCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAG 145480
| | || |||||| || ||||| |||| || | | || | ||| ||
Sbjct 522443 TATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAG 522384
Query 145481 CGCGATACATT---CCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAA 145537
| ||| ||| || ||||||| || || || || |||| | | |||||| | ||
Sbjct 522383 CTCGA---ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 522327
Query 145538 -TGCTTTCGTTCACTTTG--TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACAC 145594
||| | ||| | | ||||| || |||| ||| ||| |||||||| ||||
Sbjct 522326 TTGCACTAGTT---GTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACAC 522270
Query 145595 ATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAA 145654
| ||||| ||||||||||||||||| | ||| |||| |||||| || || || | ||| |
Sbjct 522269 AAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATA 522210
Query 145655 TTTGACGTTTTGATACAGCATTATAAAAACG 145685
||| | | || | ||||||||||| ||
Sbjct 522209 TTTTAAAAGTGGAAATTGCATTATAAAAGCG 522179
Score = 105 bits (116), Expect = 7e-18
Identities = 193/275 (70%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 143171 ATAATATGAGTGTAAGAACGACTATGGATTGTCTCAGAAAACGTCCATGTTTGAATCCAT 143230
|| ||||| || || ||||| ||| |||||||| ||||| | |||||||| |||||||
Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499
Query 143231 GTATCCAATGACGGGTCT-GAAACTAATGCCGCTAGCACCGCAGC-AGGTGCACGTCCTT 143288
|| || ||| |||| | ||||||| | | | || | ||| | |||||
Sbjct 524498 GTTTCTAATT-CGGGAATAGAAACTATAGGTAAAAA-AGCGATGTTAGGACTTCTTCCTT 524441
Query 143289 GAATAGAATCCAAAAGACTTTGATATTTTAAATTGTTGATGAAAATAT-TTTGACGATAC 143347
|||||||||| | | | |||||||||||||||| | || ||||||| ||| || ||
Sbjct 524440 GAATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTA- 524382
Query 143348 GCCGGTAGTTTTTCGAATTGAGCTCGGTCAGTCATTAAGTTGACTTCTTCAGGCCGCCAG 143407
| |||| |||| || | || || | ||| | | |||||| || | |||
Sbjct 524381 GAAGGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAA 524322
Query 143408 AAAAATGATAATTGTTTTTCAGTTAGTTCTTCAAA 143442
|||||||| | |||||||||| |||||| ||||||
Sbjct 524321 AAAAATGAAAGTTGTTTTTCAATTAGTTTTTCAAA 524287
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 75478 TGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCT-ACCTCT 75536
|| ||||||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||| ||
Sbjct 130076 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 130135
Query 75537 GAGCTAAAGGGCCTTA 75552
||||||||||||| ||
Sbjct 130136 GAGCTAAAGGGCCATA 130151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543771621321440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |