Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq129631 170 2e-37 >seq129631 Length=630463 Score = 170 bits (188), Expect = 2e-37 Identities = 424/631 (67%), Gaps = 31/631 (5%) Strand=Plus/Minus Query 145069 AACAAATCTAAAGCTTTGATTCGTTTTTTACGAATTACTGG-AtttttttC-TAGTGATT 145126 |||||||| | || || || | |||||| | || | || ||||||||| || | | | Sbjct 522792 AACAAATCAATTGCATTAATACTTTTTTTTCTTAT-ATTGCTATTTTTTTCATATTTAAT 522734 Query 145127 CATAAATCTCTTTAAACTTTATTCTATCAGTAAAATACGAATTATATAATTCATTATTAT 145186 |||||| || ||||| ||| || ||| | ||| | | |||||||| | || | Sbjct 522733 -ATAAATTTCCTTAAATTTTTTTTGATCGGAGAAAAAAAATTTATATAAGT---TAGGAA 522678 Query 145187 AGACATCAGGACTAAAAAGAGTAATGTAATCGTTTTTAAT-----CAGACGTTCAATCAT 145241 | || ||||||||| ||||||||| ||||| | || | || | ||| Sbjct 522677 CGTCAGAAGGACTAAA-----TAATGTAATTTTTTTTCCTAGTAGCATTCTTTGATACAT 522623 Query 145242 CAAATCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTT 145301 || | ||| ||||| | ||||||||||||| | | || ||||||||| | ||| | Sbjct 522622 TAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCT 522563 Query 145302 GTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGT 145361 || ||||| | ||||| | |||||| ||| || ||||| ||||||||| | | || Sbjct 522562 ATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGT 522503 Query 145362 TGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGT-TT 145420 ||| || || || | || |||||||||||||||| ||| || | || | ||| || Sbjct 522502 TGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTG-CGCTTTGGAAGTGTT 522444 Query 145421 TCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAG 145480 | | || |||||| || ||||| |||| || | | || | ||| || Sbjct 522443 TATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAG 522384 Query 145481 CGCGATACATT---CCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAA 145537 | ||| ||| || ||||||| || || || || |||| | | |||||| | || Sbjct 522383 CTCGA---ATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAA 522327 Query 145538 -TGCTTTCGTTCACTTTG--TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACAC 145594 ||| | ||| | | ||||| || |||| ||| ||| |||||||| |||| Sbjct 522326 TTGCACTAGTT---GTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACAC 522270 Query 145595 ATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAA 145654 | ||||| ||||||||||||||||| | ||| |||| |||||| || || || | ||| | Sbjct 522269 AAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATA 522210 Query 145655 TTTGACGTTTTGATACAGCATTATAAAAACG 145685 ||| | | || | ||||||||||| || Sbjct 522209 TTTTAAAAGTGGAAATTGCATTATAAAAGCG 522179 Score = 105 bits (116), Expect = 7e-18 Identities = 193/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 143171 ATAATATGAGTGTAAGAACGACTATGGATTGTCTCAGAAAACGTCCATGTTTGAATCCAT 143230 || ||||| || || ||||| ||| |||||||| ||||| | |||||||| ||||||| Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499 Query 143231 GTATCCAATGACGGGTCT-GAAACTAATGCCGCTAGCACCGCAGC-AGGTGCACGTCCTT 143288 || || ||| |||| | ||||||| | | | || | ||| | ||||| Sbjct 524498 GTTTCTAATT-CGGGAATAGAAACTATAGGTAAAAA-AGCGATGTTAGGACTTCTTCCTT 524441 Query 143289 GAATAGAATCCAAAAGACTTTGATATTTTAAATTGTTGATGAAAATAT-TTTGACGATAC 143347 |||||||||| | | | |||||||||||||||| | || ||||||| ||| || || Sbjct 524440 GAATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTCGTTA- 524382 Query 143348 GCCGGTAGTTTTTCGAATTGAGCTCGGTCAGTCATTAAGTTGACTTCTTCAGGCCGCCAG 143407 | |||| |||| || | || || | ||| | | |||||| || | ||| Sbjct 524381 GAAGGTAAATTTTGAAAATCTATTCTATCTTTAGATAAATCTATTTCTTCTGGTCTCCAA 524322 Query 143408 AAAAATGATAATTGTTTTTCAGTTAGTTCTTCAAA 143442 |||||||| | |||||||||| |||||| |||||| Sbjct 524321 AAAAATGAAAGTTGTTTTTCAATTAGTTTTTCAAA 524287 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 75478 TGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTCT-ACCTCT 75536 || ||||||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||| || Sbjct 130076 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 130135 Query 75537 GAGCTAAAGGGCCTTA 75552 ||||||||||||| || Sbjct 130136 GAGCTAAAGGGCCATA 130151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543771621321440