Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_029091.1
Length=168771
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 147 2e-30
>seq129631
Length=630463
Score = 147 bits (162), Expect = 2e-30
Identities = 289/425 (68%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 41855 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCA 41914
||| |||| ||||| || |||||| |||| |||| ||| | || | || | ||
Sbjct 522161 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 522220
Query 41915 ACCCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATT 41974
|| || |||||| |||| | | || || ||||| || || | |||||| | |||
Sbjct 522221 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 522280
Query 41975 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 42031
||| | ||| ||||| |||||||| | |||| ||| ||| | |||||
Sbjct 522281 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 522337
Query 42032 ATTTCTAAACGAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 42088
||||| ||||||| || || || || |||| |||| |||| || || | || ||
Sbjct 522338 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 522397
Query 42089 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 42148
| || | | || |||| ||||| || |||||| || | ||||| ||||||
Sbjct 522398 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 522454
Query 42149 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 42208
| |||||||||||||||||||||||||| || | || || || || || | | |||
Sbjct 522455 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 522514
Query 42209 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 42268
|| || ||||| ||||| | || || |||||||| | |||||||| | ||| | ||
Sbjct 522515 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 522574
Query 42269 GAAAA 42273
|||||
Sbjct 522575 GAAAA 522579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538932658841840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |