Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq129631 147 2e-30 >seq129631 Length=630463 Score = 147 bits (162), Expect = 2e-30 Identities = 289/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 41855 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCA 41914 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 522161 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 522220 Query 41915 ACCCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATT 41974 || || |||||| |||| | | || || ||||| || || | |||||| | ||| Sbjct 522221 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 522280 Query 41975 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 42031 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 522281 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 522337 Query 42032 ATTTCTAAACGAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 42088 ||||| ||||||| || || || || |||| |||| |||| || || | || || Sbjct 522338 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 522397 Query 42089 AAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 42148 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 522398 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 522454 Query 42149 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 42208 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 522455 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 522514 Query 42209 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 42268 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 522515 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 522574 Query 42269 GAAAA 42273 ||||| Sbjct 522575 GAAAA 522579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538932658841840