Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq129631 163 3e-35 >seq129631 Length=630463 Score = 163 bits (180), Expect = 3e-35 Identities = 307/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551 ||| || | ||| | ||| || ||||||| | |||||| | | |||||||| | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671 ||| || || || || | || |||||| || ||||| ||||| ||||| | || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791 || ||||| |||| ||||||| || ||||| || |||| || | ||| | ||||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 88792 TGAAGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGC---CTCAATAACAACGCA 88848 || | || | ||| ||||| |||| ||| | |||| ||||| | || || Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACACACA 522269 Query 88849 TGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 88908 |||||||| || |||||||| || | || | |||||| || || || | || || Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATAT 522209 Query 88909 CTGTCGAGTAGATACTGCTTCATAAAAACG 88938 | ||| || | ||| | |||||| || Sbjct 522208 TTTAAAAGTGGAAATTGCATTATAAAAGCG 522179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544934249930400