Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq129631 147 2e-30 >seq129631 Length=630463 Score = 147 bits (162), Expect = 2e-30 Identities = 306/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 38189 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 38248 ||| || | ||| | ||| ||| ||||||| | |||||| | | |||||||| | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 38249 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 38308 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 38309 AGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATG 38368 ||| || || || || | || ||| || || ||||| || || ||||| || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 38369 TTTCCAAAAAGGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTC 38428 ||| ||||||||||| || | ||| || | || || | | || | ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 38429 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 38488 || ||||| |||| ||||||| || ||||| || |||| ||| | ||||| ||||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 38489 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCACCTGC---CTCAATAACAAC 38542 || || | ||| ||| ||||| || | ||| | |||| ||||| | || Sbjct 522325 TGCACTAGTTGTAGC---ATTAATAGAGTT---TAAATTATCTGCACATTCAATTAACAC 522272 Query 38543 ACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 38602 ||| |||||||| || ||||| || || | || | |||||| || || || | || Sbjct 522271 ACAAGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGA 522212 Query 38603 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 38635 || | ||| || | ||| | |||||| || Sbjct 522211 TATTTTAAAAGTGGAAATTGCATTATAAAAGCG 522179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539641734531920