Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 122 9e-23
>seq129631
Length=630463
Score = 122 bits (134), Expect = 9e-23
Identities = 216/313 (69%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 138761 GGTGGTTCAATACCATTTGTACTATTCGATACCTGAGAAGACGATTCACAAGGCATTAAA 138820
|| |||||||||||||| ||| ||| |||| |||||||| | ||| |||||||||||
Sbjct 523509 GGAGGTTCAATACCATTAGTAGCATTAGATATTTGAGAAGAAGTTTCTGAAGGCATTAAA 523450
Query 138821 GCAGATAATGTGCTGTTTCTGATTCCGTATTTTTTCAGATCTTCACGTAATGATTCCCAG 138880
|||||||| ||| ||||| | ||| |||||||| | | || |||||||| | |||
Sbjct 523449 GCAGATAAAGTGGAATTTCTTAATCCATATTTTTTAATTTTTTTTCGTAATGAATTCCAA 523390
Query 138881 TCACAAACTAATTCCGGGGTAACCA-ATTT---ATCTACAGTCTTTTTATACCAATCAAT 138936
| || |||| || | | | || | ||||||| |||||||| ||||||
Sbjct 523389 TTTAAATGTAAT----GGTTCATTACATATCGAATCTACATCTTTTTTATATGTATCAAT 523334
Query 138937 TGGTAATTCGCCTTGACCATATCGAGTCTCTTTATATAATTCACATGGGCCTTTTTCTTT 138996
||| | | ||| | ||| ||| | ||| ||||| ||| | |||||||||||
Sbjct 523333 TGGAAGCTTACCTAAATAATAATTAGTTTGATTAAATAATAAACAAGATCCTTTTTCTTT 523274
Query 138997 AGCTAGTTTAACAGATGCTTTGATTAATGCATATTGTAATCTTTCAAATAATTCATGAGT 139056
|||| || | || ||||| | ||| ||| |||| | |||||| || ||| ||
Sbjct 523273 GGCTAATTCACAGGAAGCTTTTAGTAAATAATACTGTATTGCTTCAAAAGTTTTATGCGT 523214
Query 139057 AAACTCATTTGCA 139069
|| | ||||||
Sbjct 523213 TAAATTTTTTGCA 523201
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 137299 ATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCATGTTTGAACCCAT 137358
|| ||||| ||||| ||||| ||||||||||| || || | |||||||| || ||||
Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499
Query 137359 GTTTCAAAGCCGACATCAGAGATCAACGGCGCAAATGCCAGAGCTGGAGCTCGTCCTTGA 137418
||||| || || | ||| | | || ||| || | ||| || |||||||
Sbjct 524498 GTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGA 524439
Query 137419 ATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATACCCTTTTC 137471
||||||||||| | || ||||||||||| ||| |||||||| |||||
Sbjct 524438 ATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTC 524386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521141885897040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |