Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq129631 122 9e-23 >seq129631 Length=630463 Score = 122 bits (134), Expect = 9e-23 Identities = 216/313 (69%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 138761 GGTGGTTCAATACCATTTGTACTATTCGATACCTGAGAAGACGATTCACAAGGCATTAAA 138820 || |||||||||||||| ||| ||| |||| |||||||| | ||| ||||||||||| Sbjct 523509 GGAGGTTCAATACCATTAGTAGCATTAGATATTTGAGAAGAAGTTTCTGAAGGCATTAAA 523450 Query 138821 GCAGATAATGTGCTGTTTCTGATTCCGTATTTTTTCAGATCTTCACGTAATGATTCCCAG 138880 |||||||| ||| ||||| | ||| |||||||| | | || |||||||| | ||| Sbjct 523449 GCAGATAAAGTGGAATTTCTTAATCCATATTTTTTAATTTTTTTTCGTAATGAATTCCAA 523390 Query 138881 TCACAAACTAATTCCGGGGTAACCA-ATTT---ATCTACAGTCTTTTTATACCAATCAAT 138936 | || |||| || | | | || | ||||||| |||||||| |||||| Sbjct 523389 TTTAAATGTAAT----GGTTCATTACATATCGAATCTACATCTTTTTTATATGTATCAAT 523334 Query 138937 TGGTAATTCGCCTTGACCATATCGAGTCTCTTTATATAATTCACATGGGCCTTTTTCTTT 138996 ||| | | ||| | ||| ||| | ||| ||||| ||| | ||||||||||| Sbjct 523333 TGGAAGCTTACCTAAATAATAATTAGTTTGATTAAATAATAAACAAGATCCTTTTTCTTT 523274 Query 138997 AGCTAGTTTAACAGATGCTTTGATTAATGCATATTGTAATCTTTCAAATAATTCATGAGT 139056 |||| || | || ||||| | ||| ||| |||| | |||||| || ||| || Sbjct 523273 GGCTAATTCACAGGAAGCTTTTAGTAAATAATACTGTATTGCTTCAAAAGTTTTATGCGT 523214 Query 139057 AAACTCATTTGCA 139069 || | |||||| Sbjct 523213 TAAATTTTTTGCA 523201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 137299 ATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCATGTTTGAACCCAT 137358 || ||||| ||||| ||||| ||||||||||| || || | |||||||| || |||| Sbjct 524558 ATTATATGTGTATATGAACGTGAATGAATTGTCTCTGAAAAAGACCATGTTTCAATCCAT 524499 Query 137359 GTTTCAAAGCCGACATCAGAGATCAACGGCGCAAATGCCAGAGCTGGAGCTCGTCCTTGA 137418 ||||| || || | ||| | | || ||| || | ||| || ||||||| Sbjct 524498 GTTTCTAATTCGGGAATAGAAACTATAGGTAAAAAAGCGATGTTAGGACTTCTTCCTTGA 524439 Query 137419 ATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATACCCTTTTC 137471 ||||||||||| | || ||||||||||| ||| |||||||| ||||| Sbjct 524438 ATAGAATCAAGTAAAGTTTGATATTTTAAATTACTTATAAAAATATGTTTTTC 524386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521141885897040