Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq129631 129 6e-25 >seq129631 Length=630463 Score = 129 bits (142), Expect = 6e-25 Identities = 298/447 (67%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 141252 TTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 141311 |||||||| || || ||||||| | |||||| | | ||||| || | ||| | || Sbjct 522618 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 522559 Query 141312 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 141371 || || | || | | ||||||| ||| | ||||| ||||| || | | || || Sbjct 522558 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 522499 Query 141372 GCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAG 141431 || || || | ||||||||||| || || ||||| ||||| ||||||||||||| | Sbjct 522498 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 522439 Query 141432 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGA----AC--CCT-C 141484 ||||||||| ||| ||||| |||| || |||| ||| || ||| Sbjct 522438 AAAGGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAA 522386 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || ||||| || || ||||| || || ||||| || | | | ||||| ||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 141545 TGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGA 141604 || || | | ||||| || || | | |||| ||| |||||| | ||| || || Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266 Query 141605 ACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664 ||| || || || || || || | || || |||||||| ||||| || | || || || Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206 Query 141665 TTTAGTAGAAACTGCATCATAGAAACG 141691 ||| |||| ||||| ||| || || Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCG 522179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537338835556480