Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_031087.1
Length=168272
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 129 6e-25
>seq129631
Length=630463
Score = 129 bits (142), Expect = 6e-25
Identities = 298/447 (67%), Gaps = 14/447 (3%)
Strand=Plus/Minus
Query 141252 TTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 141311
|||||||| || || ||||||| | |||||| | | ||||| || | ||| | ||
Sbjct 522618 TTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTA 522559
Query 141312 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 141371
|| || | || | | ||||||| ||| | ||||| ||||| || | | || ||
Sbjct 522558 TTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCG 522499
Query 141372 GCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAG 141431
|| || || | ||||||||||| || || ||||| ||||| ||||||||||||| |
Sbjct 522498 GCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAA 522439
Query 141432 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGA----AC--CCT-C 141484
||||||||| ||| ||||| |||| || |||| ||| || |||
Sbjct 522438 AAAGGAATACATCCGGTATGAAATGCTTCTCC-------ATTTCTGATAGGACTTCCTAA 522386
Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544
|| ||||| || || ||||| || || ||||| || | | | ||||| |||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 141545 TGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGA 141604
|| || | | ||||| || || | | |||| ||| |||||| | ||| || ||
Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTAAATTATCTGCACATTCAATTAACACACAAGA 522266
Query 141605 ACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664
||| || || || || || || | || || |||||||| ||||| || | || || ||
Sbjct 522265 ACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTAGAGATATTTT 522206
Query 141665 TTTAGTAGAAACTGCATCATAGAAACG 141691
||| |||| ||||| ||| || ||
Sbjct 522205 AAAAGTGGAAATTGCATTATAAAAGCG 522179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537338835556480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |