Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq129631 150 2e-31 >seq129631 Length=630463 Score = 150 bits (166), Expect = 2e-31 Identities = 290/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 61678 CGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCT 61737 ||| |||| ||||| || |||||| |||| |||| ||| | || | || | || Sbjct 522161 CGTATGAATTATATTCAGCGCTTTTATAATGCAATTTCCACTTTTAAAATATCTCTACCC 522220 Query 61738 ACTCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTTGTGTAGTTATT 61797 || || |||||| |||| | | || || ||||| || || | |||||| | ||| Sbjct 522221 ACACCGATTATGTCAGGAGTAAGAACACCAACTCGTCAATTTAGTTCTTGTGTGTTAATT 522280 Query 61798 GAAGCCGGTGATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATAT 61854 ||| | ||| ||||| |||||||| | |||| ||| ||| | ||||| Sbjct 522281 GAATGTGCAGATAATTTAAACTCTATTAATGCTACAACTAGTGCA---ATTGTAAAATAT 522337 Query 61855 ATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCT 61911 ||||| ||||||| || ||||| || |||| |||| |||| || || | || || Sbjct 522338 GTTTCTCAACGAGCAGGAATAGGCATTAACGCTGGTCAAATTCGAGCTTTAGGAAGTCCT 522397 Query 61912 AAGATCGGTATGGGCGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAA 61971 | || | | || |||| ||||| || |||||| || | ||||| |||||| Sbjct 522398 A---TCAGAAATGGAGAAGCATTTCATACCGGATGTATTCCTTTTTATAAACACTTCCAA 522454 Query 61972 ACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTAT 62031 | |||||||||||||||||||||||||| || | || || || || || | | ||| Sbjct 522455 AGCGCAGTAAAATCTTGTTCTCAAGGTGGAGTTAGAGGAGGGGCCGCAACTGTTTTTTAC 522514 Query 62032 CCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGAT 62091 || || ||||| ||||| | || || |||||||| | |||||||| | ||| | || Sbjct 522515 CCAATATGGCATCTAGAAATTGAAAATTTATTAGTTTTAAAAAATAATAGAGGAATTGAA 522574 Query 62092 GAAAA 62096 ||||| Sbjct 522575 GAAAA 522579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541647588285840