Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq129631 159 4e-34 seq146710 84.2 2e-11 >seq129631 Length=630463 Score = 159 bits (176), Expect = 4e-34 Identities = 284/413 (69%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 138400 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCC 138459 ||||| | ||| | ||| || ||||||| | |||||| | | |||||||| | || Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566 Query 138460 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138519 | | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || | Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506 Query 138520 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138579 ||| || || || || | || |||||| || || || ||||| || || | || || || Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446 Query 138580 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTC 138639 ||| ||||||||||| || |||||| | |||| || | | || | ||| Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386 Query 138640 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 138699 || ||||| |||| ||||||| || ||||| || |||| || | ||||| ||||| Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326 Query 138700 TGAAGCAGAAGCTTTGTTAATAGACTTCAGCGAATCACCTGC---TTCAATAACAACGCA 138756 || | || | |||||||| || | ||| | |||| |||||| | || || Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACACACA 522269 Query 138757 TGAACTAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTA 138809 |||||||| || |||||||| || | || | |||||| || || |||| Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 522216 >seq146710 Length=16940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/93 (82%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 70417 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70475 |||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672 Query 70476 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 70505 | ||||||| ||||| ||| ||||||| Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529353748956480