Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_031103.1
Length=165772
Score E
Sequences producing significant alignments: (Bits) Value
seq129631 159 4e-34
seq146710 84.2 2e-11
>seq129631
Length=630463
Score = 159 bits (176), Expect = 4e-34
Identities = 284/413 (69%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 138400 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCC 138459
||||| | ||| | ||| || ||||||| | |||||| | | |||||||| | ||
Sbjct 522625 CATTAATTTATTAATTTGTACAGCATAATCAAGATGACGTACTCTATTTTCTTCAATTCC 522566
Query 138460 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138519
| | |||||||| ||||| | | |||||||| ||| | |||||| || || ||| || |
Sbjct 522565 TCTATTATTTTTTAAAACTAATAAATTTTCAATTTCTAGATGCCATATTGGGTAAAAAAC 522506
Query 138520 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138579
||| || || || || | || |||||| || || || ||||| || || | || || ||
Sbjct 522505 AGTTGCGGCCCCTCCTCTAACTCCACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTG 522446
Query 138580 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTC 138639
||| ||||||||||| || |||||| | |||| || | | || | |||
Sbjct 522445 TTTATAAAAAGGAATACATCCGGTATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAA 522386
Query 138640 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 138699
|| ||||| |||| ||||||| || ||||| || |||| || | ||||| |||||
Sbjct 522385 AGCTCGAATTTGACCAGCGTTAATGCCTATTCCTGCTCGTTGAGAAACATATTTTACAAT 522326
Query 138700 TGAAGCAGAAGCTTTGTTAATAGACTTCAGCGAATCACCTGC---TTCAATAACAACGCA 138756
|| | || | |||||||| || | ||| | |||| |||||| | || ||
Sbjct 522325 TGCACTAGTTGTAGCATTAATAGAGTTTA---AATTATCTGCACATTCAATTAACACACA 522269
Query 138757 TGAACTAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTA 138809
|||||||| || |||||||| || | || | |||||| || || ||||
Sbjct 522268 AGAACTAAATTGACGAGTTGGTGTTCTTACTCCTGACATAATCGGTGTGGGTA 522216
>seq146710
Length=16940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/93 (82%), Gaps = 7/93 (8%)
Strand=Plus/Plus
Query 70417 GAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70475
|||| |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||||
Sbjct 3613 GAATTGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGTCCGC 3672
Query 70476 A---AATTTGGTGCGAGAAGTGGGACTCGAACC 70505
| ||||||| ||||| ||| |||||||
Sbjct 3673 ATTTTTTTTGGTGGGAGAA---GGATTCGAACC 3702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529353748956480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |