Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq129631 379 1e-100 >seq129631 Length=630463 Score = 379 bits (420), Expect = 1e-100 Identities = 865/1298 (67%), Gaps = 10/1298 (1%) Strand=Plus/Plus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 ||| |||||||| | || | || ||||| || | || | | || |||||||| || Sbjct 138255 ATAATTATCAAATCTAGACCAATGTCCGTTGAATGTTAAGCATATTGTTCCAATTGGTCC 138314 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 ||||| ||| ||||| || || | || ||||| || || | || |||| |||||| Sbjct 138315 ATTTCTTTGTTTTCCTATTATAATTTCAGCAATACCTTTAAAATCACTATTTTCGTGATA 138374 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 | |||||| ||||| | |||||| || | |||||||| || || | | || || || Sbjct 138375 TATTTCGTCACGATATATAAACATTATTAAATCTGCGTCTTGTTCTAAAGAACCAGACTC 138434 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTG 96939 ||||||||||||||||| |||| ||| || | | ||||| || || || || | ||| Sbjct 138435 GCGTAAATCTGAATTTACTGGTCTTTTATCTGATCTTTGTTCTAGAGAACGGTTTAATTG 138494 Query 96940 TGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAAT 96999 ||| ||||| | || ||||||||||||||||| |||| || || | | | |||||| Sbjct 138495 TGATAATGCTATAACTGGTACTTGTAATTCCTTTGCCAGTGCTTTTAAGGTTCTAGAAAT 138554 Query 97000 CTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGGTA 97059 || |||||||| || |||||||| || || || || | ||| | ||| | || Sbjct 138555 TTCAGCAATTTCAAGAGTTCGGTTGTCAGAAAGAGATGGAACTCTCATTAATTGTAAATA 138614 Query 97060 GTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAACG 97119 || | ||| || | | || ||| |||||| ||||| |||||| || | ||||| Sbjct 138615 ATCAACCATTATTAAAGTTAATCCATTATTTTCACGATAAATACGACGTGCTCTAGAACG 138674 Query 97120 TAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAG 97179 | || | || || || || || ||||| ||| |||| |||| || | | | Sbjct 138675 AACTTCACTGGGAGTAAGAGCTGAAGAATCATCTATATAAATGTTCTTTTTTTTAAGTAA 138734 Query 97180 AATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAAT 97239 || | |||| ||||| | || | ||| || || || || | ||| || |||||||| Sbjct 138735 AACATTAATTGTACCAGACATACGAGACCAGTCTTCATCATTTAATTGTCCAGTTCGAAT 138794 Query 97240 ACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGG 97299 ||| | ||||| || | | | ||| || || |||||||| | || | | || Sbjct 138795 ACGTGCCTGATTTACTCTAGATAAAGATGCTAGCATACGCATCATAATTTGCTCTCCAGG 138854 Query 97300 CATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCGACGAG 97359 |||||| | ||||||| ||| || || ||||| | | | || |||||||| | Sbjct 138855 CATCTCTAAACTAAAAATCAACACTGGTTTATCATATAGCATAGCAGCATTTTCACATAA 138914 Query 97360 ATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAGATCGGA 97419 ||||| ||||| || || || ||||| || || | || || | || || || || || Sbjct 138915 GTTCATGGCAAAAGTTGTTTTACCCATTGAAGGTCTTGCTGCAATGATAATAAGTTCTGA 138974 Query 97420 CGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGTCCCGTTAC 97479 | || | |||| || || ||||| | ||| | |||| |||| | ||| ||||| Sbjct 138975 AGGTTGTAAACCTGATGTTTTTTTATTTAAATCTTGATATCCTGTATTTATTCCTGTTAC 139034 Query 97480 ACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAGAATGCT 97539 || |||| || ||| |||| ||| || | || || ||| |||| ||||| Sbjct 139035 TCCGTCATTAGGAGATAAAAATAACTTTTCAATACTAGTAACAGTTTCATCAAGAATTTG 139094 Query 97540 GGCGATATCTTTTGGACCACTACCGCTCTTTTGT----CGTTTTTCAGCTATTTCAAAAA 97595 | |||| ||||||||| | |||||| | ||||||||||| || | ||||| Sbjct 139095 TTCAATATTTTTTGGACCTGAA----TCTTTTTTAAAACGTTTTTCAGCAATCTTAAAAA 139150 Query 97596 CGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATATCCAG 97655 | | ||| || ||| | ||||| | ||| || || | ||||||| | Sbjct 139151 CACTAGATTCCGCGTAATCTAATAATTCTTCGCTTTTACGTCCTTGAGTATCATATCCTG 139210 Query 97656 CTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGAACGA 97715 | | ||||||| ||| || || | |||||||| | || | || | ||| || | | Sbjct 139211 CGTTTGCTATTTTATTAGCTACTAATATCATTTCTCTTACTATTGCTCTTTCTCGTATTA 139270 Query 97716 TATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCAAGGT 97775 | || ||||| ||| |||||| || | || || || || || || | || || | | Sbjct 139271 TGTCAGCATATGCAGTAATATTCGCTGTACTAGGAGTATTTTTCGATAATTCAGCTAAAT 139330 Query 97776 ACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCAAGTGTTA 97835 | | ||| | ||| | | ||||||||| || || ||||| | | ||| | | ||| | Sbjct 139331 AAGAAAATCTACCTACACTTTCTAATTTTCCTTTTTGTTCTAAAGATTCTGATAATGTAA 139390 Query 97836 TCAAATCAATCGGTTTGCCATGACTTAATAACCTCTCCATCTCACTGAAA-ATTTCACGA 97894 | |||||||| || | || | |||| || | ||| || ||||| ||| ||| Sbjct 139391 TTAAATCAATAGGATGTCCTAAATTTAACAATTGTTGCATTTC-TTGAAATATTAAGCGA 139449 Query 97895 TGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCAGCGGCAG 97954 || | ||| || ||||||||||||| || | | | |||| || |||||| | | Sbjct 139450 TGGGGTTTGCTAAAAAAATCATCAGCCACCACATGTTCTGAAACAGAATCCCACTGTTCG 139509 Query 97955 TTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 ||||| | |||||| ||||| ||||| | ||||||||| Sbjct 139510 TTATCTAACATTAATCCACCTAGTACTGATTGTTCTGC 139547 Score = 131 bits (144), Expect = 1e-25 Identities = 230/335 (69%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 44703 CGAGCGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGT 44762 |||| || | ||||||||| || ||||| | | || |||||||| || || |||||| Sbjct 140998 CGAGTTCCTAACATTTGCATCGTACCGCCAATGTTAACTATAATTTCTGTTGTATAACGT 140939 Query 44763 TCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGA 44822 || | ||| | ||| ||| || | |||| ||| ||||| || || || ||| Sbjct 140938 TCAAGACCATTTTGGTCTTGCCATTTTCTAGTTTGAAGGGATCCTTCAATATATACTTGA 140879 Query 44823 GAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTA 44882 |||||||||| ||||| || | ||||||||||| | |||||| || || || | | || Sbjct 140878 GAACCTTTTCTCAAATATTCTCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTA 140819 Query 44883 TGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTT 44942 ||||||||||||| |||||| | || || || | || || ||| || ||| Sbjct 140818 TGCCATTCTGTTTTCTCTTTATTTTCACCAGTATTTTTATCTTTCCAGTTCTCTGAAGTT 140759 Query 44943 GCGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGC 45002 || | | | || | || || |||||||| ||||| | | || || ||||| Sbjct 140758 GCAAGTGTCATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGG 140699 Query 45003 CCCAGGGTACCAATCAGGATGACTTTGTTTACACC 45037 || | | |||||| | ||| ||||| |||||||| Sbjct 140698 CCTAAGTGACCAATTAAGATTACTTTATTTACACC 140664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| |||||| Sbjct 130076 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTGACCACT 130135 Query 98379 GAGCTAAAGGGCC 98391 ||||||||||||| Sbjct 130136 GAGCTAAAGGGCC 130148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330297767334244