Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq129631 156 5e-33 >seq129631 Length=630463 Score = 156 bits (172), Expect = 5e-33 Identities = 269/388 (69%), Gaps = 2/388 (1%) Strand=Plus/Minus Query 143390 CATAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTTTTTCAGAACGAGCA 143449 |||| || | |||||| | | || || || | || | || ||||| | ||| | | Sbjct 522602 CATAATCAAGATGACGTACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 522543 Query 143450 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 143509 |||||||| ||| | |||||| || || ||| || |||| || || || || | | || Sbjct 522542 AATTTTCAATTTCTAGATGCCATATTGGGTAAAAAACAGTTGCGGCCCCTCCTCTAACTC 522483 Query 143510 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGG 143569 ||||||| ||||| ||||| || || | ||||| ||||| | || |||||| |||| Sbjct 522482 CACCTTGAGAACAAGATTTTACTGCGCTTTGGAAGTGTTTATAAAAAGGAATACATCCGG 522423 Query 143570 TATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 143629 |||| |||| || | | ||| || ||| ||| ||||| |||| |||| | Sbjct 522422 TATGAAATGCTTCTCCATTTCTGATAGGACTTCCTAAAGCTCGAATTTGACCAGCGTTAA 522363 Query 143630 TACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAG 143689 | || || || || |||| ||||| |||| | |||| ||| || ||||||| Sbjct 522362 TGCCTATTCCTGCTCGTTGAGAAACATATTTTACAATTGCACTAGTTGTAGCATTAATAG 522303 Query 143690 A-TTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTA 143748 | ||| | | | || | |||||| | ||||||||||||||||||||| |||||||| Sbjct 522302 AGTTTAAATTA-TCTGCACATTCAATTAACACACAAGAACTAAATTGACGAGTTGGTGTT 522244 Query 143749 CGTGCTCCAGCCATAATAGGAGTTGGTA 143776 | | |||| | |||||| || || |||| Sbjct 522243 CTTACTCCTGACATAATCGGTGTGGGTA 522216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542653709197440